Aliases for LEMD1-DT Gene

Subcategory (RNA class) for LEMD1-DT Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LEMD1-DT Gene

  • LEMD1 Divergent Transcript 2 3
  • Novel Transcript 5
  • NONHSAG004055 94
  • HSALNG0009942 169
  • Lnc-CDK18-1 170
  • AC098936.1 5
  • LEMD1-DT 2

External Ids for LEMD1-DT Gene

Summaries for LEMD1-DT Gene

GeneCards Summary for LEMD1-DT Gene

LEMD1-DT (LEMD1 Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LEMD1-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LEMD1-DT Gene

Genomics for LEMD1-DT Gene

GeneHancer (GH) Regulatory Elements for LEMD1-DT Gene

Promoters and enhancers for LEMD1-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J205454 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE dbSUPER 750.6 +0.3 305 3.3 GLIS2 ZBTB8A ZNF740 ZSCAN4 POLR2A SP2 ZFX USF1 TEAD1 ZFHX2 BLACAT1 LEMD1 LEMD1-DT
GH01J205477 Enhancer 1.3 FANTOM5 Ensembl ENCODE 12.2 +23.9 23878 6 ZNF785 SP1 HCFC1 ZNF133 RELA HLF ZNF121 MNT NFIB NKRF MDM4 ELK4 RBBP5 CDK18 LEMD1 LEMD1-DT MIR135B KLHDC8A LEMD1-AS1 MFSD4A
GH01J205430 Promoter/Enhancer 1.2 ENCODE CraniofacialAtlas 11.9 -25.3 -25254 0.8 CTCF SMARCE1 CC2D1A L3MBTL2 RAD21 TEAD4 ZNF148 GTF2F1 SMARCA4 MTA1 MDM4 LEMD1 LEMD1-DT CDK18 LEMD1-AS1 KLHDC8A MFSD4A ELK4 MIR135B BLACAT1
GH01J205485 Enhancer 1.1 Ensembl ENCODE 11.8 +29.7 29679 1.2 CTCF MLX RBPJ NR2F1 NR2F6 MIXL1 CC2D1A RAD21 ZNF121 SP1 LEMD1 LEMD1-DT MIR135B KLHDC8A LEMD1-AS1 NUAK2 MFSD4A TRK-TTT8-1 CDK18
GH01J205340 Enhancer 0.7 Ensembl ENCODE 10.7 -114.6 -114621 1 MAFK CEBPB JUND NFE2 MAFG CUX1 WT1 FOS ZNF664 ZFP91 LEMD1-AS1 LEMD1 LEMD1-DT CDK18 MFSD4A HSALNG0009937 SNRPGP10 KLHDC8A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LEMD1-DT on UCSC Golden Path with GeneCards custom track

Genomic Locations for LEMD1-DT Gene

Genomic Locations for LEMD1-DT Gene
chr1:205,455,922-205,469,106
(GRCh38/hg38)
Size:
13,185 bases
Orientation:
Plus strand
chr1:205,425,057-205,438,152
(GRCh37/hg19)
Size:
13,096 bases
Orientation:
Plus strand

Genomic View for LEMD1-DT Gene

Genes around LEMD1-DT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LEMD1-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LEMD1-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LEMD1-DT Gene

Proteins for LEMD1-DT Gene

Post-translational modifications for LEMD1-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for LEMD1-DT Gene

Domains & Families for LEMD1-DT Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LEMD1-DT Gene

Function for LEMD1-DT Gene

Phenotypes From GWAS Catalog for LEMD1-DT Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LEMD1-DT Gene

Localization for LEMD1-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LEMD1-DT Gene

Pathways & Interactions for LEMD1-DT Gene

PathCards logo

SuperPathways for LEMD1-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for LEMD1-DT Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LEMD1-DT Gene

Drugs & Compounds for LEMD1-DT Gene

No Compound Related Data Available

Transcripts for LEMD1-DT Gene

mRNA/cDNA for LEMD1-DT Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNACentral transcripts :
(2) LncBook transcripts :
(2) NONCODE transcripts :
(2) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LEMD1-DT Gene

No ASD Table

Relevant External Links for LEMD1-DT Gene

GeneLoc Exon Structure for
LEMD1-DT
ECgene alternative splicing isoforms for
LEMD1-DT

Expression for LEMD1-DT Gene

SOURCE GeneReport for Unigene cluster for LEMD1-DT Gene:

Hs.434167
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LEMD1-DT Gene

Orthologs for LEMD1-DT Gene

Evolution for LEMD1-DT Gene

ENSEMBL:
Gene Tree for LEMD1-DT (if available)
TreeFam:
Gene Tree for LEMD1-DT (if available)

No data available for Orthologs for LEMD1-DT Gene

Paralogs for LEMD1-DT Gene

No data available for Paralogs for LEMD1-DT Gene

Variants for LEMD1-DT Gene

Sequence variations from dbSNP and Humsavar for LEMD1-DT Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000169393 -- 205,466,131(+) G/T intron_variant
rs1000404142 -- 205,454,626(+) G/A upstream_transcript_variant
rs1000569461 -- 205,467,181(+) C/G/T non_coding_transcript_variant
rs1000699768 -- 205,466,349(+) G/A intron_variant
rs1000852273 -- 205,455,858(+) G/A upstream_transcript_variant

Additional Variant Information for LEMD1-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LEMD1-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LEMD1-DT Gene

Disorders for LEMD1-DT Gene

No disorders were found for LEMD1-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LEMD1-DT Gene

Publications for LEMD1-DT Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56

No data available for External Links for LEMD1-DT Gene

Products for LEMD1-DT Gene

Sources for LEMD1-DT Gene