Aliases for LEMD1-AS1 Gene

Subcategory (RNA class) for LEMD1-AS1 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for LEMD1-AS1 Gene

  • LEMD1 Antisense RNA 1 2 3 5
  • LEMD1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • LEMD1-AS1 2 170
  • NONHSAG004053 94

External Ids for LEMD1-AS1 Gene

Previous GeneCards Identifiers for LEMD1-AS1 Gene

  • GC01P205345

Summaries for LEMD1-AS1 Gene

GeneCards Summary for LEMD1-AS1 Gene

LEMD1-AS1 (LEMD1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LEMD1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LEMD1-AS1 Gene

Genomics for LEMD1-AS1 Gene

GeneHancer (GH) Regulatory Elements for LEMD1-AS1 Gene

Promoters and enhancers for LEMD1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J205370 Enhancer 1.1 Ensembl ENCODE dbSUPER 759 +0.6 559 6.8 ZNF362 MNT ZNF652 SP7 PRDM1 PRDM10 ZEB2 ZNF629 ZNF692 JUND LEMD1-AS1 KLHDC8A MIR135B CDK18 MFSD4A LOC105371698
GH01J205343 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 10.8 -29.3 -29251 0.8 SMARCE1 NR2F6 L3MBTL2 RERE SP1 SP7 ZSCAN21 PPARG TRIM24 KLF14 KLHDC8A NUAK2 LEMD1-AS1 CDK18 SNRPGP10 HSALNG0009937 lnc-NUAK2-2
GH01J205477 Enhancer 1.3 FANTOM5 Ensembl ENCODE 10.7 +106.5 106548 6 ZNF785 SP1 HCFC1 ZNF133 RELA HLF ZNF121 MNT NFIB NKRF MDM4 ELK4 RBBP5 CDK18 LEMD1 LEMD1-DT MIR135B KLHDC8A LEMD1-AS1 MFSD4A
GH01J205430 Promoter/Enhancer 1.2 ENCODE CraniofacialAtlas 10.7 +57.4 57416 0.8 CTCF SMARCE1 CC2D1A L3MBTL2 RAD21 TEAD4 ZNF148 GTF2F1 SMARCA4 MTA1 MDM4 LEMD1 LEMD1-DT CDK18 LEMD1-AS1 KLHDC8A MFSD4A ELK4 MIR135B BLACAT1
GH01J205344 Promoter/Enhancer 1.2 Ensembl dbSUPER 10.8 -28.6 -28551 0.2 SMARCE1 NR2F6 L3MBTL2 TEAD4 RERE SP1 CBFA2T2 SP7 ZSCAN21 PPARG NUAK2 LEMD1-AS1 CDK18 SNRPGP10 HSALNG0009937 lnc-NUAK2-2 KLHDC8A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LEMD1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LEMD1-AS1 Gene

Genomic Locations for LEMD1-AS1 Gene
chr1:205,373,252-205,387,440
(GRCh38/hg38)
Size:
14,189 bases
Orientation:
Plus strand
chr1:205,342,380-205,356,568
(GRCh37/hg19)
Size:
14,189 bases
Orientation:
Plus strand

Genomic View for LEMD1-AS1 Gene

Genes around LEMD1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LEMD1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LEMD1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LEMD1-AS1 Gene

Proteins for LEMD1-AS1 Gene

Post-translational modifications for LEMD1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LEMD1-AS1 Gene

Domains & Families for LEMD1-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LEMD1-AS1 Gene

Function for LEMD1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LEMD1-AS1 Gene

Localization for LEMD1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LEMD1-AS1 Gene

Pathways & Interactions for LEMD1-AS1 Gene

PathCards logo

SuperPathways for LEMD1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LEMD1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LEMD1-AS1 Gene

Drugs & Compounds for LEMD1-AS1 Gene

No Compound Related Data Available

Transcripts for LEMD1-AS1 Gene

mRNA/cDNA for LEMD1-AS1 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNACentral transcripts :
(1) LNCipedia transcripts :
(1) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LEMD1-AS1 Gene

No ASD Table

Relevant External Links for LEMD1-AS1 Gene

GeneLoc Exon Structure for
LEMD1-AS1
ECgene alternative splicing isoforms for
LEMD1-AS1

Expression for LEMD1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LEMD1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for LEMD1-AS1 Gene

This gene is overexpressed in Ovary (x25.9), Adrenal Gland (x14.7), and Testis (x6.2).

SOURCE GeneReport for Unigene cluster for LEMD1-AS1 Gene:

Hs.585440
genes like me logo Genes that share expression patterns with LEMD1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LEMD1-AS1 Gene

Orthologs for LEMD1-AS1 Gene

Evolution for LEMD1-AS1 Gene

ENSEMBL:
Gene Tree for LEMD1-AS1 (if available)
TreeFam:
Gene Tree for LEMD1-AS1 (if available)

No data available for Orthologs for LEMD1-AS1 Gene

Paralogs for LEMD1-AS1 Gene

No data available for Paralogs for LEMD1-AS1 Gene

Variants for LEMD1-AS1 Gene

Sequence variations from dbSNP and Humsavar for LEMD1-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000144175 -- 205,386,610(+) CCCCCC/CCCCCCC non_coding_transcript_variant
rs1000230743 -- 205,373,116(+) T/A/C upstream_transcript_variant
rs1000256339 -- 205,379,434(+) T/C intron_variant
rs1000496965 -- 205,385,290(+) T/C non_coding_transcript_variant
rs1000574705 -- 205,374,454(+) A/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LEMD1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1014629 CNV gain 25217958
nsv832381 CNV gain 17160897

Additional Variant Information for LEMD1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LEMD1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LEMD1-AS1 Gene

Disorders for LEMD1-AS1 Gene

Additional Disease Information for LEMD1-AS1

No disorders were found for LEMD1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LEMD1-AS1 Gene

Publications for LEMD1-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56

Products for LEMD1-AS1 Gene

Sources for LEMD1-AS1 Gene