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Aliases for LDLRAD4-AS1 Gene

Subcategory (RNA class) for LDLRAD4-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LDLRAD4-AS1 Gene

  • LDLRAD4 Antisense RNA 1 2 3 5

External Ids for LDLRAD4-AS1 Gene

Summaries for LDLRAD4-AS1 Gene

GeneCards Summary for LDLRAD4-AS1 Gene

LDLRAD4-AS1 (LDLRAD4 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LDLRAD4-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LDLRAD4-AS1 Gene

Genomics for LDLRAD4-AS1 Gene

GeneHancer (GH) Regulatory Elements for LDLRAD4-AS1 Gene

Promoters and enhancers for LDLRAD4-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J013425 Enhancer 0.9 Ensembl dbSUPER 600.7 +1.6 1633 1.4 NCOA3 MYC POLR2A CREB1 TARDBP CTBP1 KLF4 PKNOX1 ZNF217 DPF2 LDLRAD4-AS1 LDLRAD4 ENSG00000267393
GH18J013427 Enhancer 0.8 Ensembl dbSUPER 600.7 +0.1 97 0.9 SP1 RXRA JUND YY1 RAD21 HNF4A REST KLF1 FOXA1 EGR2 LDLRAD4-AS1 ENSG00000267393 LDLRAD4
GH18J013428 Enhancer 0.5 Ensembl dbSUPER 600.7 -1.0 -967 1 ZIC2 LDLRAD4-AS1 GC18P013454 LDLRAD4
GH18J013429 Enhancer 0.4 Ensembl dbSUPER 600.7 -1.8 -1767 0.2 LDLRAD4-AS1 GC18P013454 LDLRAD4
GH18J013418 Enhancer 1 Ensembl ENCODE 0.4 +9.3 9264 1.2 ELF3 CEBPG SP1 ZNF644 RXRA CEBPA GATAD2A GABPA FOXK2 SOX13 LDLRAD4-AS1 ENSG00000267393 LDLRAD4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LDLRAD4-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LDLRAD4-AS1 Gene

Genomic Locations for LDLRAD4-AS1 Gene
chr18:13,419,421-13,427,534
(GRCh38/hg38)
Size:
8,114 bases
Orientation:
Minus strand
chr18:13,419,420-13,427,533
(GRCh37/hg19)
Size:
8,114 bases
Orientation:
Minus strand

Genomic View for LDLRAD4-AS1 Gene

Genes around LDLRAD4-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LDLRAD4-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LDLRAD4-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LDLRAD4-AS1 Gene

Proteins for LDLRAD4-AS1 Gene

Post-translational modifications for LDLRAD4-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LDLRAD4-AS1 Gene

Domains & Families for LDLRAD4-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LDLRAD4-AS1 Gene

Function for LDLRAD4-AS1 Gene

Phenotypes From GWAS Catalog for LDLRAD4-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LDLRAD4-AS1 Gene

Localization for LDLRAD4-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LDLRAD4-AS1 Gene

Pathways & Interactions for LDLRAD4-AS1 Gene

PathCards logo

SuperPathways for LDLRAD4-AS1 Gene

No Data Available

Interacting Proteins for LDLRAD4-AS1 Gene

Gene Ontology (GO) - Biological Process for LDLRAD4-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LDLRAD4-AS1 Gene

Drugs & Compounds for LDLRAD4-AS1 Gene

No Compound Related Data Available

Transcripts for LDLRAD4-AS1 Gene

mRNA/cDNA for LDLRAD4-AS1 Gene

(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LDLRAD4-AS1 Gene

No ASD Table

Relevant External Links for LDLRAD4-AS1 Gene

GeneLoc Exon Structure for
LDLRAD4-AS1
ECgene alternative splicing isoforms for
LDLRAD4-AS1

Expression for LDLRAD4-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LDLRAD4-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for LDLRAD4-AS1 Gene

This gene is overexpressed in Artery - Aorta (x8.2).
genes like me logo Genes that share expression patterns with LDLRAD4-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LDLRAD4-AS1 Gene

Orthologs for LDLRAD4-AS1 Gene

Evolution for LDLRAD4-AS1 Gene

ENSEMBL:
Gene Tree for LDLRAD4-AS1 (if available)
TreeFam:
Gene Tree for LDLRAD4-AS1 (if available)

No data available for Orthologs for LDLRAD4-AS1 Gene

Paralogs for LDLRAD4-AS1 Gene

No data available for Paralogs for LDLRAD4-AS1 Gene

Variants for LDLRAD4-AS1 Gene

Sequence variations from dbSNP and Humsavar for LDLRAD4-AS1 Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs1000029530 -- 13,423,911(-) G/A intron_variant
rs1000147219 -- 13,429,423(-) C/T upstream_transcript_variant
rs1000359843 -- 13,424,159(-) A/C intron_variant
rs1000756674 -- 13,428,411(-) C/G upstream_transcript_variant
rs1000786354 -- 13,428,845(-) A/C upstream_transcript_variant

Additional Variant Information for LDLRAD4-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LDLRAD4-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LDLRAD4-AS1 Gene

Disorders for LDLRAD4-AS1 Gene

Additional Disease Information for LDLRAD4-AS1

No disorders were found for LDLRAD4-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LDLRAD4-AS1 Gene

Publications for LDLRAD4-AS1 Gene

  1. Identification of genes related to Parkinson's disease using expressed sequence tags. (PMID: 17213182) Kim JM … Kim NS (DNA research : an international journal for rapid publication of reports on genes and genomes 2006) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

No data available for External Links for LDLRAD4-AS1 Gene

Products for LDLRAD4-AS1 Gene

Sources for LDLRAD4-AS1 Gene

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