Aliases for LDHAP2 Gene

Aliases for LDHAP2 Gene

  • Lactate Dehydrogenase A Pseudogene 2 2 3 5
  • Lactate Dehydrogenase A-Like 2 2 3
  • LDHAL2 3

External Ids for LDHAP2 Gene

Previous HGNC Symbols for LDHAP2 Gene

  • LDHAL2

Previous GeneCards Identifiers for LDHAP2 Gene

  • GC01P235903

Summaries for LDHAP2 Gene

GeneCards Summary for LDHAP2 Gene

LDHAP2 (Lactate Dehydrogenase A Pseudogene 2) is a Pseudogene.

Additional gene information for LDHAP2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LDHAP2 Gene

Genomics for LDHAP2 Gene

GeneHancer (GH) Regulatory Elements for LDHAP2 Gene

Promoters and enhancers for LDHAP2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J235736 Enhancer 0.5 Ensembl dbSUPER 750.6 -1.4 -1394 1 CTBP1 ZNF507 LDHAP2 ARID4B ENSG00000273058 HEATR1 GNG4 HSALNG0011726 LYST
GH01J235735 Enhancer 0.3 Ensembl dbSUPER 750.6 -0.4 -394 0.2 LDHAP2 GNG4 HSALNG0011726 LYST
GH01J235159 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 32.4 -576.7 -576720 2.4 SIN3A SP1 ZBTB40 MLX SMARCE1 RBPJ POLR2A CREB1 HCFC1 MIXL1 RBM34 lnc-GGPS1-13 lnc-TOMM20-6 RPS21P1 ARID4B LDHAP2 IRF2BP2 GGPS1 GNG4 NID1
GH01J236522 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 22.4 +786.1 786092 3.2 ZNF785 SIN3A ZNF24 ZBTB40 ZBTB6 SMARCE1 USF2 NR2F6 CREB1 ZNF362 LGALS8 LGALS8-AS1 ENSG00000230325 HEATR1 ENSG00000273058 MTR LDHAP2
GH01J234968 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 21.7 -758.9 -758878 21.3 ZNF785 SIN3A ZNF24 SP1 ZBTB40 GATA3 SREBF1 LCORL FOXA1 MLX ENSG00000258082 lnc-GGPS1-16 ARID4B GGPS1 IRF2BP2 RPS21P1 ENSG00000236244 ENSG00000231272 LDHAP2 ENSG00000238005
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LDHAP2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LDHAP2 Gene

Genomic Locations for LDHAP2 Gene
chr1:235,737,895-235,739,609
(GRCh38/hg38)
Size:
1,715 bases
Orientation:
Plus strand
chr1:235,901,195-235,902,909
(GRCh37/hg19)
Size:
1,715 bases
Orientation:
Plus strand

Genomic View for LDHAP2 Gene

Genes around LDHAP2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LDHAP2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LDHAP2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LDHAP2 Gene

Proteins for LDHAP2 Gene

Post-translational modifications for LDHAP2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LDHAP2 Gene

Domains & Families for LDHAP2 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LDHAP2 Gene

Function for LDHAP2 Gene

Phenotypes From GWAS Catalog for LDHAP2 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LDHAP2 Gene

Localization for LDHAP2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LDHAP2 Gene

Pathways & Interactions for LDHAP2 Gene

PathCards logo

SuperPathways for LDHAP2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LDHAP2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LDHAP2 Gene

Drugs & Compounds for LDHAP2 Gene

No Compound Related Data Available

Transcripts for LDHAP2 Gene

mRNA/cDNA for LDHAP2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LDHAP2 Gene

No ASD Table

Relevant External Links for LDHAP2 Gene

GeneLoc Exon Structure for
LDHAP2
ECgene alternative splicing isoforms for
LDHAP2

Expression for LDHAP2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LDHAP2 Gene

mRNA differential expression in normal tissues according to GTEx for LDHAP2 Gene

This gene is overexpressed in Whole Blood (x5.5).

NURSA nuclear receptor signaling pathways regulating expression of LDHAP2 Gene:

LDHAP2
genes like me logo Genes that share expression patterns with LDHAP2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LDHAP2 Gene

Orthologs for LDHAP2 Gene

Evolution for LDHAP2 Gene

ENSEMBL:
Gene Tree for LDHAP2 (if available)
TreeFam:
Gene Tree for LDHAP2 (if available)

No data available for Orthologs for LDHAP2 Gene

Paralogs for LDHAP2 Gene

No data available for Paralogs for LDHAP2 Gene

Variants for LDHAP2 Gene

Additional Variant Information for LDHAP2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LDHAP2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LDHAP2 Gene

Disorders for LDHAP2 Gene

No disorders were found for LDHAP2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LDHAP2 Gene

Publications for LDHAP2 Gene

  1. Localization of the LDHA gene to 11p14----11p15 by in situ hybridization of an LDHA cDNA probe to two translocations with breakpoints in 11p13. (PMID: 3793094) Yang-Feng TL … Francke U (Human genetics 1986) 2 3 56

Products for LDHAP2 Gene

Sources for LDHAP2 Gene