Aliases for LDHAL6CP Gene

Aliases for LDHAL6CP Gene

  • Lactate Dehydrogenase A Like 6C, Pseudogene 2 3 5
  • LDH6C 2 3
  • Lactate Dehydrogenase A-Like 6B Pseudogene 3
  • LDHAL6CP 5

External Ids for LDHAL6CP Gene

Previous GeneCards Identifiers for LDHAL6CP Gene

  • GC12P063397

Summaries for LDHAL6CP Gene

GeneCards Summary for LDHAL6CP Gene

LDHAL6CP (Lactate Dehydrogenase A Like 6C, Pseudogene) is a Pseudogene.

Additional gene information for LDHAL6CP Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LDHAL6CP Gene

Genomics for LDHAL6CP Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LDHAL6CP Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J062966 Enhancer 1 Ensembl ENCODE 9.2 -36.6 -36646 1.6 ZNF223 FOXA1 KMT2B THAP11 FOXA2 KDM6A SAP130 CUX1 ZNF585B RARA 5MWI_A-032 RPL14P1 PPM1H ENSG00000252660 DPY19L2 PABPC1P4 LDHAL6CP HSALNG0091872 AVPR1A
GH12J063021 Enhancer 0.7 Ensembl ENCODE 9.4 +17.7 17746 2.8 EBF1 SPI1 EGR1 CREB1 POU5F1 NANOG CEBPG ENSG00000257779 LDHAL6CP PPM1H HSALNG0091876 HSALNG0091877 HSALNG0091872 AVPR1A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LDHAL6CP on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LDHAL6CP Gene

Latest Assembly
chr12:63,003,455-63,006,902
(GRCh38/hg38)
Size:
3,448 bases
Orientation:
Plus strand

Previous Assembly
chr12:63,397,235-63,398,862
(GRCh37/hg19 by Entrez Gene)
Size:
1,628 bases
Orientation:
Plus strand

chr12:63,397,333-63,400,682
(GRCh37/hg19 by Ensembl)
Size:
3,350 bases
Orientation:
Plus strand

Genomic View for LDHAL6CP Gene

Genes around LDHAL6CP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LDHAL6CP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LDHAL6CP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LDHAL6CP Gene

Proteins for LDHAL6CP Gene

Post-translational modifications for LDHAL6CP Gene

No Post-translational modifications

No data available for DME Specific Peptides for LDHAL6CP Gene

Domains & Families for LDHAL6CP Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LDHAL6CP Gene

Function for LDHAL6CP Gene

Phenotypes From GWAS Catalog for LDHAL6CP Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LDHAL6CP Gene

Localization for LDHAL6CP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LDHAL6CP Gene

Pathways & Interactions for LDHAL6CP Gene

PathCards logo

SuperPathways for LDHAL6CP Gene

No Data Available

Gene Ontology (GO) - Biological Process for LDHAL6CP Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LDHAL6CP Gene

Drugs & Compounds for LDHAL6CP Gene

No Compound Related Data Available

Transcripts for LDHAL6CP Gene

mRNA/cDNA for LDHAL6CP Gene

2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LDHAL6CP Gene

No ASD Table

Relevant External Links for LDHAL6CP Gene

GeneLoc Exon Structure for
LDHAL6CP

Expression for LDHAL6CP Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LDHAL6CP Gene

mRNA differential expression in normal tissues according to GTEx for LDHAL6CP Gene

This gene is overexpressed in Testis (x50.0).
genes like me logo Genes that share expression patterns with LDHAL6CP: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LDHAL6CP Gene

Orthologs for LDHAL6CP Gene

Evolution for LDHAL6CP Gene

ENSEMBL:
Gene Tree for LDHAL6CP (if available)
TreeFam:
Gene Tree for LDHAL6CP (if available)
Alliance of Genome Resources:
Additional Orthologs for LDHAL6CP

No data available for Orthologs for LDHAL6CP Gene

Paralogs for LDHAL6CP Gene

No data available for Paralogs for LDHAL6CP Gene

Variants for LDHAL6CP Gene

Additional Variant Information for LDHAL6CP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LDHAL6CP
Leiden Open Variation Database (LOVD)
LDHAL6CP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LDHAL6CP Gene

Disorders for LDHAL6CP Gene

No disorders were found for LDHAL6CP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LDHAL6CP Gene

Publications for LDHAL6CP Gene

  1. Computational analyses of mammalian lactate dehydrogenases: human, mouse, opossum and platypus LDHs. (PMID: 19679512) Holmes RS … Goldberg E (Computational biology and chemistry 2009) 2 3
  2. Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study. (PMID: 17903294) Yang Q … O'Donnell CJ (BMC medical genetics 2007) 3

Products for LDHAL6CP Gene

Sources for LDHAL6CP Gene