Aliases for LCT-AS1 Gene

Data sources for LCT-AS1 Gene:

Subcategory (RNA class) for LCT-AS1 Gene

lncRNA

Aliases for LCT-AS1 Gene

External Ids for LCT-AS1 Gene

Summaries for LCT-AS1 Gene

GeneCards Summary for LCT-AS1 Gene

LCT-AS1 (LCT Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LCT-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LCT-AS1 Gene

Genomics for LCT-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LCT-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J135819 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 250.7 -0.1 -59 1.4 SP1 BCL11A POLR2A BHLHE40 CTCF REST IRF4 SMC3 TEAD3 ZNF316 LCT-AS1 UBXN4 MCM6 ENSG00000200664 HSALNG0019076 LCT
GH02J135822 Enhancer 0.4 dbSUPER 250.7 +1.2 1201 0.6 EBF1 BATF SPI1 LCT-AS1 DARS1 RF00017-3320 HSALNG0019076 LCT UBXN4
GH02J135797 Enhancer 0.9 Ensembl ENCODE 12.8 -22.2 -22190 1.6 CEBPA MNT CTCF BHLHE40 ELF1 CEBPB SIN3A REST MAX TRIM22 DARS1 LCT-AS1 LCT MCM6 MAP3K19 RAB3GAP1 UBXN4 HSALNG0019075 HSALNG0019076
GH02J135791 Enhancer 0.8 Ensembl ENCODE 12.8 -28.0 -27962 1.6 MAFF EBF1 ZNF316 BATF MAFK MAFG IKZF1 HNF4A RFX5 NBN LCT-AS1 LCT RAB3GAP1 MAP3K19 UBXN4 HSALNG0019075 NONHSAG029370.2
GH02J135894 Enhancer 0.9 FANTOM5 Ensembl 10.8 +72.1 72109 5.4 MNT ARNT CTCF ELF1 ZNF316 SPI1 NFE2 FOXK2 EP400 MAFG DARS1 LCT LCT-AS1 ENSG00000200664 MCM6 MANEALP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LCT-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LCT-AS1 Gene

Latest Assembly
chr2:135,820,191-135,829,678
(GRCh38/hg38)
Size:
9,488 bases
Orientation:
Plus strand

Previous Assembly
chr2:136,577,761-136,580,657
(GRCh37/hg19 by Entrez Gene)
Size:
2,897 bases
Orientation:
Plus strand

chr2:136,577,761-136,580,657
(GRCh37/hg19 by Ensembl)
Size:
2,897 bases
Orientation:
Plus strand

Genomic View for LCT-AS1 Gene

Genes around LCT-AS1 on UCSC Golden Path with GeneCards custom track
LCT-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LCT-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LCT-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LCT-AS1 Gene

Proteins for LCT-AS1 Gene

Post-translational modifications for LCT-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LCT-AS1 Gene

Domains & Families for LCT-AS1 Gene

Gene Families for LCT-AS1 Gene

genes like me logo Genes that share domains with LCT-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LCT-AS1 Gene

Function for LCT-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LCT-AS1 Gene

Localization for LCT-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LCT-AS1 Gene

Pathways & Interactions for LCT-AS1 Gene

PathCards logo

SuperPathways for LCT-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LCT-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LCT-AS1 Gene

Drugs & Compounds for LCT-AS1 Gene

No Compound Related Data Available

Transcripts for LCT-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LCT-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000114194_9606 lncRNA 1862 2

RefSeq: NR_045486,

Ensembl: ENST00000437007 (view in UCSC) ,

URS0000D59FD7_9606 lncRNA 667 1

LNCipedia: lnc-UBXN4-1:3,

URS0000D5C9E7_9606 lncRNA 657 1

LncBook: HSALNT0040242,

LCT-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LCT-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LCT-AS1 Gene

No ASD Table

Relevant External Links for LCT-AS1 Gene

GeneLoc Exon Structure for
LCT-AS1

Expression for LCT-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LCT-AS1

SOURCE GeneReport for Unigene cluster for LCT-AS1 Gene:

Hs.662020
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LCT-AS1 Gene

Orthologs for LCT-AS1 Gene

Evolution for LCT-AS1 Gene

ENSEMBL:
Gene Tree for LCT-AS1 (if available)
TreeFam:
Gene Tree for LCT-AS1 (if available)

No data available for Orthologs for LCT-AS1 Gene

Paralogs for LCT-AS1 Gene

No data available for Paralogs for LCT-AS1 Gene

Variants for LCT-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LCT-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LCT-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LCT-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LCT-AS1 Gene

Disorders for LCT-AS1 Gene

Additional Disease Information for LCT-AS1

Open Targets Platform
Open Targets Platform

No disorders were found for LCT-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LCT-AS1 Gene

Publications for LCT-AS1 Gene

  1. Long non-coding RNA LOC100507600 functions as a competitive endogenous RNA to regulate BMI1 expression by sponging miR128-1-3p in Hirschsprung's disease. (PMID: 29429387) Su Y … Tang W (Cell cycle (Georgetown, Tex.) 2018) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LCT-AS1 Gene

Products for LCT-AS1 Gene

Sources for LCT-AS1 Gene