Aliases for LCMT1-AS2 Gene

Subcategory (RNA class) for LCMT1-AS2 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LCMT1-AS2 Gene

  • LCMT1 Antisense RNA 2 2 3 5
  • LCMT1-AS2 2 5 165
  • NONHSAG018936.2 91
  • HSALNG0110336 164

External Ids for LCMT1-AS2 Gene

Summaries for LCMT1-AS2 Gene

GeneCards Summary for LCMT1-AS2 Gene

LCMT1-AS2 (LCMT1 Antisense RNA 2) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LCMT1-AS2 include Scott Syndrome.

Additional gene information for LCMT1-AS2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LCMT1-AS2 Gene

Genomics for LCMT1-AS2 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LCMT1-AS2 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LCMT1-AS2 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LCMT1-AS2 Gene

Genomic Locations for LCMT1-AS2 Gene
chr16:25,140,571-25,149,032
(GRCh38/hg38)
Size:
8,462 bases
Orientation:
Minus strand
chr16:25,151,892-25,160,353
(GRCh37/hg19)
Size:
8,462 bases
Orientation:
Minus strand

Genomic View for LCMT1-AS2 Gene

Genes around LCMT1-AS2 on UCSC Golden Path with GeneCards custom track
LCMT1-AS2 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LCMT1-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LCMT1-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LCMT1-AS2 Gene

Proteins for LCMT1-AS2 Gene

Post-translational modifications for LCMT1-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LCMT1-AS2 Gene

Domains & Families for LCMT1-AS2 Gene

Gene Families for LCMT1-AS2 Gene

genes like me logo Genes that share domains with LCMT1-AS2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LCMT1-AS2 Gene

Function for LCMT1-AS2 Gene

Phenotypes From GWAS Catalog for LCMT1-AS2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LCMT1-AS2 Gene

Localization for LCMT1-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LCMT1-AS2 Gene

Pathways & Interactions for LCMT1-AS2 Gene

PathCards logo

SuperPathways for LCMT1-AS2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LCMT1-AS2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LCMT1-AS2 Gene

Drugs & Compounds for LCMT1-AS2 Gene

No Compound Related Data Available

Transcripts for LCMT1-AS2 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LCMT1-AS2 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00002A47F7_9606 lncRNA 5666 3

Ensembl: ENST00000565214 (view in UCSC) ,

LNCipedia: LCMT1-AS2:3,

NONCODE: NONHSAT141391.2,

URS0000186B36_9606 lncRNA 2601 3

Ensembl: ENST00000562280 (view in UCSC) ,

LncBook: HSALNT0229053, HSALNT0229054,

LNCipedia: LCMT1-AS2:1, LCMT1-AS2:5,

URS000075E662_9606 lncRNA 2607 2

HGNC: 51178,

RefSeq: NR_039998,

URS00008B973F_9606 lncRNA 2607 2

LNCipedia: LCMT1-AS2:2,

NONCODE: NONHSAT141390.2,

URS00009BFEC6_9606 lncRNA 924 2

LncBook: HSALNT0229055,

NONCODE: NONHSAT173708.1,

LCMT1-AS2 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LCMT1-AS2 Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LCMT1-AS2 Gene

No ASD Table

Relevant External Links for LCMT1-AS2 Gene

GeneLoc Exon Structure for
LCMT1-AS2

Expression for LCMT1-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LCMT1-AS2 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LCMT1-AS2

genes like me logo Genes that share expression patterns with LCMT1-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LCMT1-AS2 Gene

Orthologs for LCMT1-AS2 Gene

Evolution for LCMT1-AS2 Gene

ENSEMBL:
Gene Tree for LCMT1-AS2 (if available)
TreeFam:
Gene Tree for LCMT1-AS2 (if available)

No data available for Orthologs for LCMT1-AS2 Gene

Paralogs for LCMT1-AS2 Gene

No data available for Paralogs for LCMT1-AS2 Gene

Variants for LCMT1-AS2 Gene

Additional dbSNP identifiers (rs#s) for LCMT1-AS2 Gene

Structural Variations from Database of Genomic Variants (DGV) for LCMT1-AS2 Gene

Variant ID Type Subtype PubMed ID
dgv809e212 CNV loss 25503493
esv2758638 CNV gain+loss 17122850

Additional Variant Information for LCMT1-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LCMT1-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LCMT1-AS2 Gene

Disorders for LCMT1-AS2 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LCMT1-AS2 Gene - From: DISEASES

Disorder Aliases PubMed IDs
scott syndrome
  • scts
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LCMT1-AS2: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LCMT1-AS2 Gene

Publications for LCMT1-AS2 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for LCMT1-AS2 Gene

Sources for LCMT1-AS2 Gene