Aliases for LASTR Gene

Data sources for LASTR Gene:

RNA type for LASTR Gene

lncRNA

Aliases for LASTR Gene

External Ids for LASTR Gene

Previous HGNC Symbols for LASTR Gene

  • LINC02657

Summaries for LASTR Gene

GeneCards Summary for LASTR Gene

LASTR (LncRNA Associated With SART3 Regulation Of Splicing) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LASTR Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LASTR Gene

Genomics for LASTR Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LASTR Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LASTR on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LASTR Gene

Latest Assembly
chr10:5,594,984-5,632,566
(GRCh38/hg38)
Size:
37,583 bases
Orientation:
Minus strand

Previous Assembly
chr10:5,636,947-5,638,081
(GRCh37/hg19 by Entrez Gene)
Size:
1,135 bases
Orientation:
Minus strand

Genomic View for LASTR Gene

Genes around LASTR on UCSC Golden Path with GeneCards custom track
LASTR in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LASTR Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LASTR Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LASTR Gene

Proteins for LASTR Gene

Post-translational modifications for LASTR Gene

No Post-translational modifications

No data available for DME Specific Peptides for LASTR Gene

Domains & Families for LASTR Gene

Gene Families for LASTR Gene

genes like me logo Genes that share domains with LASTR: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LASTR Gene

Function for LASTR Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LASTR Gene

Localization for LASTR Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LASTR Gene

Pathways & Interactions for LASTR Gene

PathCards logo

SuperPathways for LASTR Gene

No Data Available

Gene Ontology (GO) - Biological Process for LASTR Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LASTR Gene

Drugs & Compounds for LASTR Gene

No Compound Related Data Available

Transcripts for LASTR Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LASTR Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000D5A084_9606 lncRNA 706 2

Ensembl: ENST00000478294 (view in UCSC) ,

LNCipedia: lnc-ASB13-3:7,

URS000217A538_9606 lncRNA 1407 1

Ensembl: ENST00000676438 (view in UCSC) ,

URS000218411A_9606 lncRNA 1266 1

Ensembl: ENST00000675383 (view in UCSC) ,

URS000217CA83_9606 lncRNA 1108 1

Ensembl: ENST00000674724 (view in UCSC) ,

URS00021815D2_9606 lncRNA 1105 1

Ensembl: ENST00000675960 (view in UCSC) ,

LASTR in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LASTR Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LASTR Gene

No ASD Table

Relevant External Links for LASTR Gene

GeneLoc Exon Structure for
LASTR

Expression for LASTR Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LASTR Gene

Orthologs for LASTR Gene

Evolution for LASTR Gene

ENSEMBL:
Gene Tree for LASTR (if available)
TreeFam:
Gene Tree for LASTR (if available)
Alliance of Genome Resources:
Additional Orthologs for LASTR

No data available for Orthologs for LASTR Gene

Paralogs for LASTR Gene

No data available for Paralogs for LASTR Gene

Variants for LASTR Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LASTR Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LASTR Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LASTR
Leiden Open Variation Database (LOVD)
LASTR

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LASTR Gene

Disorders for LASTR Gene

No disorders were found for LASTR Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LASTR Gene

Publications for LASTR Gene

  1. Stress-induced lncRNA LASTR fosters cancer cell fitness by regulating the activity of the U4/U6 recycling factor SART3. (PMID: 31956895) De Troyer L … Sablina AA (Nucleic acids research 2020) 2 3
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3

Products for LASTR Gene

Sources for LASTR Gene