Aliases for LARGE-IT1 Gene

Subcategory (RNA class) for LARGE-IT1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LARGE-IT1 Gene

  • LARGE Intronic Transcript 1 2 3 5
  • LARGE-IT1 2 5 165
  • LARGE Intronic Transcript 1 (Non-Protein Coding) 2 3
  • NONHSAG033775.2 91
  • HSALNG0135074 164

External Ids for LARGE-IT1 Gene

Previous GeneCards Identifiers for LARGE-IT1 Gene

  • GC22M034120

Summaries for LARGE-IT1 Gene

GeneCards Summary for LARGE-IT1 Gene

LARGE-IT1 (LARGE Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LARGE-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LARGE-IT1 Gene

Genomics for LARGE-IT1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LARGE-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J033725 Enhancer 0.8 Ensembl ENCODE dbSUPER 600.7 -0.9 -887 6 POLR2A SPI1 BHLHE40 MYC MAX LARGE-AS1 LARGE-IT1 SNORA50B piR-38580-196 LARGE1 SYN3
GH22J033756 Enhancer 1.2 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.4 -32.7 -32688 2.4 CTCF ZIC2 SP1 RUNX3 FOXA2 ATF3 YY1 ZBTB17 PKNOX1 ZBTB33 SNORA50B LARGE-AS1 LARGE-IT1 piR-38580-196 piR-61101-454 LARGE1 SYN3
GH22J033745 Enhancer 1 Ensembl ENCODE dbSUPER 10.9 -22.3 -22287 3.6 ZNF776 SP1 CEBPA SCRT2 FOXA2 YY1 GABPA ZBTB33 SCRT1 JUND SNORA50B LARGE-AS1 LARGE-IT1 piR-38580-196 LARGE1 SYN3
GH22J033652 Enhancer 0.8 Ensembl ENCODE 11.3 +71.1 71112 2.8 CTCF ATF7 ZNF629 TCF7 FOXA2 ATF2 ZNF610 ZFP69B KLF17 FOSL2 LARGE-AS1 LARGE-IT1 SNORA50B lnc-SYN3-8 piR-38352-356 LARGE1 SYN3
GH22J033666 Enhancer 0.8 FANTOM5 Ensembl ENCODE 10.7 +56.0 56012 5.8 ELF1 EGR2 SPI1 ZNF121 SNORA50B LARGE-AS1 LARGE-IT1 lnc-SYN3-8 piR-50444-293 LARGE1 SYN3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LARGE-IT1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LARGE-IT1 Gene

Genomic Locations for LARGE-IT1 Gene
chr22:33,723,832-33,724,913
(GRCh38/hg38)
Size:
1,082 bases
Orientation:
Minus strand
chr22:34,119,818-34,120,898
(GRCh37/hg19)
Size:
1,081 bases
Orientation:
Minus strand

Genomic View for LARGE-IT1 Gene

Genes around LARGE-IT1 on UCSC Golden Path with GeneCards custom track
LARGE-IT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LARGE-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LARGE-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for LARGE-IT1 Gene

Proteins for LARGE-IT1 Gene

Post-translational modifications for LARGE-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LARGE-IT1 Gene

Domains & Families for LARGE-IT1 Gene

Gene Families for LARGE-IT1 Gene

genes like me logo Genes that share domains with LARGE-IT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LARGE-IT1 Gene

Function for LARGE-IT1 Gene

Phenotypes From GWAS Catalog for LARGE-IT1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LARGE-IT1 Gene

Localization for LARGE-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LARGE-IT1 Gene

Pathways & Interactions for LARGE-IT1 Gene

PathCards logo

SuperPathways for LARGE-IT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LARGE-IT1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LARGE-IT1 Gene

Drugs & Compounds for LARGE-IT1 Gene

No Compound Related Data Available

Transcripts for LARGE-IT1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LARGE-IT1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000384946_9606 lncRNA 558 5

HGNC: 41357,

Ensembl: ENST00000445391 (view in UCSC) ,

LncBook: HSALNT0277191,

LNCipedia: LARGE-IT1:1,

NONCODE: NONHSAT085010.2,

URS00009B80AC_9606 lncRNA 558 2

LncBook: HSALNT0277192,

NONCODE: NONHSAT192827.1,

LARGE-IT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LARGE-IT1 Gene

1 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LARGE-IT1 Gene

No ASD Table

Relevant External Links for LARGE-IT1 Gene

GeneLoc Exon Structure for
LARGE-IT1

Expression for LARGE-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LARGE-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for LARGE-IT1 Gene

This gene is overexpressed in Testis (x34.5), Cervix - Ectocervix (x6.4), Vagina (x6.3), and Brain - Cerebellar Hemisphere (x5.7).
genes like me logo Genes that share expression patterns with LARGE-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LARGE-IT1 Gene

Orthologs for LARGE-IT1 Gene

Evolution for LARGE-IT1 Gene

ENSEMBL:
Gene Tree for LARGE-IT1 (if available)
TreeFam:
Gene Tree for LARGE-IT1 (if available)

No data available for Orthologs for LARGE-IT1 Gene

Paralogs for LARGE-IT1 Gene

No data available for Paralogs for LARGE-IT1 Gene

Variants for LARGE-IT1 Gene

Additional Variant Information for LARGE-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LARGE-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LARGE-IT1 Gene

Disorders for LARGE-IT1 Gene

No disorders were found for LARGE-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LARGE-IT1 Gene

Publications for LARGE-IT1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

No data available for Mastermind for LARGE-IT1 Gene

Products for LARGE-IT1 Gene

Sources for LARGE-IT1 Gene