Aliases for LAMC1-AS1 Gene

Data sources for LAMC1-AS1 Gene:

Subcategory (RNA class) for LAMC1-AS1 Gene

lncRNA

Aliases for LAMC1-AS1 Gene

External Ids for LAMC1-AS1 Gene

Summaries for LAMC1-AS1 Gene

GeneCards Summary for LAMC1-AS1 Gene

LAMC1-AS1 (LAMC1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LAMC1-AS1 include Colorectal Cancer.

Additional gene information for LAMC1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LAMC1-AS1 Gene

Genomics for LAMC1-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LAMC1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J183138 Enhancer 1.1 Ensembl ENCODE dbSUPER 275.6 +1.9 1881 2.4 FEZF1 CEBPA HOMEZ CEBPB FOXA2 SAP130 EP300 ZNF148 ETV4 RARA LAMC1-AS1 MN309026 lnc-LAMC2-1 LAMC1 LAMC2
GH01J183145 Enhancer 0.5 Ensembl dbSUPER 275.5 -1.6 -1619 0.6 RBM22 ZFX LAMC1-AS1 RNU6-41P LAMC1 lnc-NMNAT2-3 LAMC2
GH01J183469 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 54.2 -330.6 -330572 4.3 ZSCAN16 CHD2 TBP ZBTB10 BCL11A SP1 FEZF1 CEBPA SIX5 NR2C1 SMG7 SMG7-AS1 HSALNG0008973 DHX9 LAMC1-AS1 HMGN1P4 LAMC1 ENSG00000271387 RNASEL LAMC2
GH01J183021 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 30.2 +116.6 116583 7 ZSCAN16 ZBTB10 MXD4 BCL11A FEZF1 DEK ZFP64 ZNF217 CTCF BRCA1 LAMC1 lnc-DHX9-4 LAMC1-AS1 DHX9 SMG7 HMGN1P4 RNU6-41P LAMC2 HSALNG0008956
GH01J182388 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 22.6 +750.3 750281 5.6 CHD2 TBP SP1 ZBTB10 MXD4 FEZF1 MNT IKZF1 SMAD5 ZFP64 GLUL HSALNG0008911 HSALNG0008912 DHX9 LAMC1-AS1 HMGN1P4 RNASEL LAMC2 TEDDM1 HSALNG0008910
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LAMC1-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LAMC1-AS1 Gene

Latest Assembly
chr1:183,138,401-183,141,282
(GRCh38/hg38)
Size:
2,882 bases
Orientation:
Minus strand

Previous Assembly
chr1:183,107,537-183,110,405
(GRCh37/hg19 by Entrez Gene)
Size:
2,869 bases
Orientation:
Minus strand

chr1:183,107,537-183,110,417
(GRCh37/hg19 by Ensembl)
Size:
2,881 bases
Orientation:
Minus strand

Genomic View for LAMC1-AS1 Gene

Genes around LAMC1-AS1 on UCSC Golden Path with GeneCards custom track
LAMC1-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LAMC1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LAMC1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LAMC1-AS1 Gene

Proteins for LAMC1-AS1 Gene

Post-translational modifications for LAMC1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LAMC1-AS1 Gene

Domains & Families for LAMC1-AS1 Gene

Gene Families for LAMC1-AS1 Gene

genes like me logo Genes that share domains with LAMC1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LAMC1-AS1 Gene

Function for LAMC1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LAMC1-AS1 Gene

Localization for LAMC1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LAMC1-AS1 Gene

Pathways & Interactions for LAMC1-AS1 Gene

PathCards logo

SuperPathways for LAMC1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LAMC1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LAMC1-AS1 Gene

Drugs & Compounds for LAMC1-AS1 Gene

No Compound Related Data Available

Transcripts for LAMC1-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LAMC1-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000052F285_9606 lncRNA 482 3

Ensembl: ENST00000457852 (view in UCSC) ,

LncBook: HSALNT0018525,

LNCipedia: LAMC1-AS1:3,

URS0000BC460C_9606 lncRNA 466 1

RefSeq: NR_149048,

URS0001BE961F_9606 lncRNA 479 1

LncBook: HSALNT0018525,

LAMC1-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LAMC1-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LAMC1-AS1 Gene

No ASD Table

Relevant External Links for LAMC1-AS1 Gene

GeneLoc Exon Structure for
LAMC1-AS1

Expression for LAMC1-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LAMC1-AS1 Gene

Orthologs for LAMC1-AS1 Gene

Evolution for LAMC1-AS1 Gene

ENSEMBL:
Gene Tree for LAMC1-AS1 (if available)
TreeFam:
Gene Tree for LAMC1-AS1 (if available)

No data available for Orthologs for LAMC1-AS1 Gene

Paralogs for LAMC1-AS1 Gene

No data available for Paralogs for LAMC1-AS1 Gene

Variants for LAMC1-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LAMC1-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LAMC1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LAMC1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LAMC1-AS1 Gene

Disorders for LAMC1-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LAMC1-AS1 Gene - From: LNC

Disorder Aliases PubMed IDs
colorectal cancer
  • crc
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LAMC1-AS1

genes like me logo Genes that share disorders with LAMC1-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LAMC1-AS1 Gene

Publications for LAMC1-AS1 Gene

  1. A functional polymorphism in lnc-LAMC2-1:1 confers risk of colorectal cancer by affecting miRNA binding. (PMID: 26905585) Gong J … Miao X (Carcinogenesis 2016) 2 3 74
  2. Association of lnc-LAMC2-1:1 rs2147578 and CASC8 rs10505477 Polymorphisms with Risk of Childhood Acute Lymphoblastic Leukemia (PMID: 28032728) Hashemi M … Taheri M (Asian Pacific journal of cancer prevention : APJCP 2016) 2 3
  3. The rs2147578 C > G polymorphism in the Inc-LAMC2-1:1 gene is associated with increased neuroblastoma risk in the Henan children. (PMID: 30285664) Yang T … Zou Y (BMC cancer 2018) 3

Products for LAMC1-AS1 Gene

Sources for LAMC1-AS1 Gene