LACAT1 Gene (RNA Gene)

Lung Adenocarcinoma-Associated Transcript 1

GC17P077254
GIFtS:
5

Aliases for LACAT1 Gene

Subcategory (RNA class) for LACAT1 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LACAT1 Gene

  • Lung Adenocarcinoma-Associated Transcript 1 3

External Ids for LACAT1 Gene

Summaries for LACAT1 Gene

GeneCards Summary for LACAT1 Gene

LACAT1 (Lung Adenocarcinoma-Associated Transcript 1) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LACAT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LACAT1 Gene

Genomics for LACAT1 Gene

GeneHancer (GH) Regulatory Elements for LACAT1 Gene

Promoters and enhancers for LACAT1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LACAT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LACAT1 Gene

Genomic Locations for LACAT1 Gene
chr17:77,253,764-77,270,801
(GRCh38/hg38)
Size:
17,038 bases
Orientation:
Plus strand

Genomic View for LACAT1 Gene

Genes around LACAT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LACAT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LACAT1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LACAT1 Gene

Proteins for LACAT1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LACAT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LACAT1 Gene

Domains & Families for LACAT1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LACAT1 Gene

Function for LACAT1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LACAT1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LACAT1 Gene

Localization for LACAT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LACAT1 Gene

Pathways & Interactions for LACAT1 Gene

PathCards logo

SuperPathways for LACAT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LACAT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LACAT1 Gene

Drugs & Compounds for LACAT1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LACAT1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LACAT1 Gene

(1) Additional mRNA sequences :

Alternative Splicing Database (ASD) splice patterns (SP) for LACAT1 Gene

No ASD Table

Relevant External Links for LACAT1 Gene

GeneLoc Exon Structure for
LACAT1

Expression for LACAT1 Gene

Products:

  1. Primer
  2. Gene Expression Assay
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LACAT1 Gene

Orthologs for LACAT1 Gene

No data available for Orthologs and Evolution for LACAT1 Gene

Paralogs for LACAT1 Gene

No data available for Paralogs for LACAT1 Gene

Variants for LACAT1 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for LACAT1 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000024137 -- 77,256,782(+) G/A/C genic_upstream_transcript_variant, intron_variant
rs1000025552 -- 77,260,542(+) G/A genic_downstream_transcript_variant, genic_upstream_transcript_variant, intron_variant
rs1000094169 -- 77,266,053(+) A/C genic_downstream_transcript_variant, intron_variant, non_coding_transcript_variant
rs1000276190 -- 77,265,781(+) C/T genic_downstream_transcript_variant, genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1000371359 -- 77,260,700(+) C/G genic_downstream_transcript_variant, genic_upstream_transcript_variant, intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LACAT1 Gene

Disorders for LACAT1 Gene

No disorders were found for LACAT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LACAT1 Gene

Publications for LACAT1 Gene

  1. The landscape of long noncoding RNAs in the human transcriptome. (PMID: 25599403) Iyer MK … Chinnaiyan AM (Nature genetics 2015) 3 56

No data available for External Links for LACAT1 Gene

Products for LACAT1 Gene

Sources for LACAT1 Gene