Aliases for L3MBTL4-AS1 Gene

Subcategory (RNA class) for L3MBTL4-AS1 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for L3MBTL4-AS1 Gene

  • L3MBTL4 Antisense RNA 1 2 3 5
  • L3MBTL4-AS1 2 170
  • HSALNG0119795 169
  • NONHSAG023274 94

External Ids for L3MBTL4-AS1 Gene

Summaries for L3MBTL4-AS1 Gene

GeneCards Summary for L3MBTL4-AS1 Gene

L3MBTL4-AS1 (L3MBTL4 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for L3MBTL4-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for L3MBTL4-AS1 Gene

Genomics for L3MBTL4-AS1 Gene

GeneHancer (GH) Regulatory Elements for L3MBTL4-AS1 Gene

Promoters and enhancers for L3MBTL4-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J006254 Promoter/Enhancer 0.8 Ensembl ENCODE 750.6 -0.9 -859 2.7 RUNX3 JUNB BATF PRDM6 L3MBTL4-AS1 lnc-ARHGAP28-9 L3MBTL4
GH18J006249 Enhancer 0.7 Ensembl ENCODE 0.4 -7.1 -7081 0.9 CREM IKZF2 RUNX3 JUNB RAD21 ATF2 ATF7 NFATC1 lnc-ARHGAP28-9 L3MBTL4-AS1 L3MBTL4
GH18J006250 Enhancer 0.2 Ensembl 0.4 -5.8 -5829 0.2 lnc-ARHGAP28-9 L3MBTL4-AS1 L3MBTL4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around L3MBTL4-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for L3MBTL4-AS1 Gene

Genomic Locations for L3MBTL4-AS1 Gene
chr18:6,256,730-6,260,934
(GRCh38/hg38)
Size:
4,205 bases
Orientation:
Plus strand
chr18:6,256,746-6,260,933
(GRCh37/hg19)
Size:
4,188 bases
Orientation:
Plus strand

Genomic View for L3MBTL4-AS1 Gene

Genes around L3MBTL4-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
L3MBTL4-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for L3MBTL4-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for L3MBTL4-AS1 Gene

Proteins for L3MBTL4-AS1 Gene

Post-translational modifications for L3MBTL4-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for L3MBTL4-AS1 Gene

Domains & Families for L3MBTL4-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for L3MBTL4-AS1 Gene

Function for L3MBTL4-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for L3MBTL4-AS1 Gene

Localization for L3MBTL4-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for L3MBTL4-AS1 Gene

Pathways & Interactions for L3MBTL4-AS1 Gene

PathCards logo

SuperPathways for L3MBTL4-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for L3MBTL4-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for L3MBTL4-AS1 Gene

Drugs & Compounds for L3MBTL4-AS1 Gene

No Compound Related Data Available

Transcripts for L3MBTL4-AS1 Gene

mRNA/cDNA for L3MBTL4-AS1 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(6) RNACentral transcripts :
(3) LncBook transcripts :
(4) LNCipedia transcripts :
(3) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for L3MBTL4-AS1 Gene

No ASD Table

Relevant External Links for L3MBTL4-AS1 Gene

GeneLoc Exon Structure for
L3MBTL4-AS1
ECgene alternative splicing isoforms for
L3MBTL4-AS1

Expression for L3MBTL4-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for L3MBTL4-AS1 Gene

genes like me logo Genes that share expression patterns with L3MBTL4-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for L3MBTL4-AS1 Gene

Orthologs for L3MBTL4-AS1 Gene

Evolution for L3MBTL4-AS1 Gene

ENSEMBL:
Gene Tree for L3MBTL4-AS1 (if available)
TreeFam:
Gene Tree for L3MBTL4-AS1 (if available)

No data available for Orthologs for L3MBTL4-AS1 Gene

Paralogs for L3MBTL4-AS1 Gene

No data available for Paralogs for L3MBTL4-AS1 Gene

Variants for L3MBTL4-AS1 Gene

Sequence variations from dbSNP and Humsavar for L3MBTL4-AS1 Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs1000231248 -- 6,257,529(+) G/A intron_variant
rs1000262317 -- 6,257,799(+) A/G intron_variant
rs1000594676 -- 6,258,896(+) A/G intron_variant
rs1000808059 -- 6,256,295(+) G/T upstream_transcript_variant
rs1001511304 -- 6,254,886(+) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for L3MBTL4-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv3318n100 CNV gain 25217958
nsv1059678 CNV gain 25217958

Additional Variant Information for L3MBTL4-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
L3MBTL4-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for L3MBTL4-AS1 Gene

Disorders for L3MBTL4-AS1 Gene

Additional Disease Information for L3MBTL4-AS1

No disorders were found for L3MBTL4-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for L3MBTL4-AS1 Gene

Publications for L3MBTL4-AS1 Gene

No publications were found for L3MBTL4-AS1 Gene.

Products for L3MBTL4-AS1 Gene

Sources for L3MBTL4-AS1 Gene