Aliases for KRTAP5-AS1 Gene

Subcategory (RNA class) for KRTAP5-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for KRTAP5-AS1 Gene

  • KRTAP5-1/KRTAP5-2 Antisense RNA 1 2 3 5
  • KRTAP5-AS1 2 5 165
  • NONHSAG007380.2 91
  • HSALNG0082122 164

External Ids for KRTAP5-AS1 Gene

Additional External Ids for KRTAP5-AS1 Gene

Previous GeneCards Identifiers for KRTAP5-AS1 Gene

  • GC11P001592

Summaries for KRTAP5-AS1 Gene

GeneCards Summary for KRTAP5-AS1 Gene

KRTAP5-AS1 (KRTAP5-1/KRTAP5-2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with KRTAP5-AS1 include Hepatocellular Carcinoma.

Additional gene information for KRTAP5-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for KRTAP5-AS1 Gene

Genomics for KRTAP5-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for KRTAP5-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around KRTAP5-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for KRTAP5-AS1 Gene

Genomic Locations for KRTAP5-AS1 Gene
chr11:1,571,353-1,602,078
(GRCh38/hg38)
Size:
30,726 bases
Orientation:
Plus strand
chr11:1,592,583-1,620,414
(GRCh37/hg19)
Size:
27,832 bases
Orientation:
Plus strand

Genomic View for KRTAP5-AS1 Gene

Genes around KRTAP5-AS1 on UCSC Golden Path with GeneCards custom track
KRTAP5-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
KRTAP5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KRTAP5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KRTAP5-AS1 Gene

Proteins for KRTAP5-AS1 Gene

Post-translational modifications for KRTAP5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KRTAP5-AS1 Gene

Domains & Families for KRTAP5-AS1 Gene

Gene Families for KRTAP5-AS1 Gene

genes like me logo Genes that share domains with KRTAP5-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for KRTAP5-AS1 Gene

Function for KRTAP5-AS1 Gene

Phenotypes From GWAS Catalog for KRTAP5-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KRTAP5-AS1 Gene

Localization for KRTAP5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for KRTAP5-AS1 Gene

Pathways & Interactions for KRTAP5-AS1 Gene

PathCards logo

SuperPathways for KRTAP5-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for KRTAP5-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for KRTAP5-AS1 Gene

Drugs & Compounds for KRTAP5-AS1 Gene

No Compound Related Data Available

Transcripts for KRTAP5-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for KRTAP5-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005C6188_9606 lncRNA 2265 4

HGNC: 27877,

RefSeq: NR_021489,

Ensembl: ENST00000424148 (view in UCSC) , ENST00000631278 (view in UCSC) ,

NONCODE: NONHSAT017407.2,

URS0000260765_9606 lncRNA 570 4

Ensembl: ENST00000524947 (view in UCSC) , ENST00000625453 (view in UCSC) , ENST00000628227 (view in UCSC) ,

LncBook: HSALNT0171020,

LNCipedia: KRTAP5-AS1:1,

NONCODE: NONHSAT017406.2,

URS0000216185_9606 lncRNA 519 4

Ensembl: ENST00000532922 (view in UCSC) , ENST00000629172 (view in UCSC) , ENST00000630780 (view in UCSC) ,

LncBook: HSALNT0171024,

LNCipedia: KRTAP5-AS1:5,

NONCODE: NONHSAT017409.2,

URS000054962C_9606 lncRNA 409 3

Ensembl: ENST00000534077 (view in UCSC) , ENST00000627125 (view in UCSC) , ENST00000630653 (view in UCSC) ,

LncBook: HSALNT0171025,

LNCipedia: KRTAP5-AS1:6,

URS0000EEC26C_9606 lncRNA 754 1

Ensembl: ENST00000659213 (view in UCSC) ,

KRTAP5-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for KRTAP5-AS1 Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for KRTAP5-AS1 Gene

No ASD Table

Relevant External Links for KRTAP5-AS1 Gene

GeneLoc Exon Structure for
KRTAP5-AS1

Expression for KRTAP5-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for KRTAP5-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for KRTAP5-AS1 Gene

This gene is overexpressed in Skin - Not Sun Exposed (Suprapubic) (x7.8), Brain - Cerebellar Hemisphere (x6.8), and Brain - Cerebellum (x5.2).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for KRTAP5-AS1

genes like me logo Genes that share expression patterns with KRTAP5-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KRTAP5-AS1 Gene

Orthologs for KRTAP5-AS1 Gene

Evolution for KRTAP5-AS1 Gene

ENSEMBL:
Gene Tree for KRTAP5-AS1 (if available)
TreeFam:
Gene Tree for KRTAP5-AS1 (if available)

No data available for Orthologs for KRTAP5-AS1 Gene

Paralogs for KRTAP5-AS1 Gene

No data available for Paralogs for KRTAP5-AS1 Gene

Variants for KRTAP5-AS1 Gene

Additional dbSNP identifiers (rs#s) for KRTAP5-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for KRTAP5-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2743945 CNV deletion 23290073
esv2761643 CNV gain 21179565
nsv1051627 CNV gain 25217958
nsv1129508 CNV tandem duplication 24896259
nsv481162 CNV novel sequence insertion 20440878
nsv552999 CNV gain 21841781
nsv975871 CNV duplication 23825009

Additional Variant Information for KRTAP5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KRTAP5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for KRTAP5-AS1 Gene

Disorders for KRTAP5-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for KRTAP5-AS1 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
hepatocellular carcinoma
  • hcc
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with KRTAP5-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for KRTAP5-AS1 Gene

Publications for KRTAP5-AS1 Gene

  1. Non-coding RNAs participate in the regulatory network of CLDN4 via ceRNA mediated miRNA evasion. (PMID: 28819095) Song YX … Wang ZN (Nature communications 2017) 2 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for KRTAP5-AS1 Gene

Sources for KRTAP5-AS1 Gene