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Aliases for KRTAP5-AS1 Gene

Subcategory (RNA class) for KRTAP5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for KRTAP5-AS1 Gene

  • KRTAP5-1/KRTAP5-2 Antisense RNA 1 2 3 5

External Ids for KRTAP5-AS1 Gene

Previous GeneCards Identifiers for KRTAP5-AS1 Gene

  • GC11P001592

Summaries for KRTAP5-AS1 Gene

GeneCards Summary for KRTAP5-AS1 Gene

KRTAP5-AS1 (KRTAP5-1/KRTAP5-2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with KRTAP5-AS1 include Astrocytoma and Hepatocellular Carcinoma.

Additional gene information for KRTAP5-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KRTAP5-AS1 Gene

Genomics for KRTAP5-AS1 Gene

GeneHancer (GH) Regulatory Elements for KRTAP5-AS1 Gene

Promoters and enhancers for KRTAP5-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J001567 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 622.1 -0.4 -350 8 CTCF ZKSCAN8 ZNF148 ZBTB7A SP1 CREM MZF1 ZNF639 RAD21 CREB1 KRTAP5-AS1 DUSP8 KRTAP5-2 KRTAP5-5 MOB2 GC11M001565
GH11J001545 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 20.3 -23.5 -23508 4.2 CTCF ZNF148 ZSCAN21 SP1 GLIS2 ZBTB8A ZBTB33 PRDM10 ZIC2 ATF1 KRTAP5-AS1 MOB2 TNNI2 TNNT3 BRSK2 DUSP8 KRTAP5-3 GC11M001556 GC11P001533
GH11J001530 Promoter/Enhancer 1.4 EPDnew Ensembl ENCODE dbSUPER 17.6 -40.1 -40051 5 ZIC2 CTCF POLR2A ZNF687 GLIS1 ZBTB33 MNT MOB2 GC11M001525 KRTAP5-AS1 TOLLIP TOLLIP-AS1 KRTAP5-5 GATD1 GC11P001533
GH11J001595 Enhancer 0.8 Ensembl ENCODE 30.2 +25.0 25048 7.2 CTCF ZNF121 POLR2A TRIM22 MNT SCRT2 EZH2 CREB1 SCRT1 SMC3 KRTAP5-2 KRTAP5-AS1 KRTAP5-5 MOB2 GC11M001589 GC11P001598
GH11J001605 Enhancer 0.7 Ensembl ENCODE 32.4 +36.0 35995 3.3 MLLT1 IKZF1 ELF1 NBN GLIS1 ETV6 KRTAP5-3 KRTAP5-AS1 KRTAP5-5 KRTAP5-1 DUSP8 FAM99B LINC02708 KRTAP5-6 MOB2 GC11P001598
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around KRTAP5-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for KRTAP5-AS1 Gene

Genomic Locations for KRTAP5-AS1 Gene
chr11:1,571,353-1,599,184
(GRCh38/hg38)
Size:
27,832 bases
Orientation:
Plus strand
chr11:1,592,583-1,620,414
(GRCh37/hg19)
Size:
27,832 bases
Orientation:
Plus strand

Genomic View for KRTAP5-AS1 Gene

Genes around KRTAP5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KRTAP5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KRTAP5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KRTAP5-AS1 Gene

Proteins for KRTAP5-AS1 Gene

Post-translational modifications for KRTAP5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KRTAP5-AS1 Gene

Domains & Families for KRTAP5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KRTAP5-AS1 Gene

Function for KRTAP5-AS1 Gene

Phenotypes From GWAS Catalog for KRTAP5-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KRTAP5-AS1 Gene

Localization for KRTAP5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for KRTAP5-AS1 Gene

Pathways & Interactions for KRTAP5-AS1 Gene

PathCards logo

SuperPathways for KRTAP5-AS1 Gene

No Data Available

Interacting Proteins for KRTAP5-AS1 Gene

Gene Ontology (GO) - Biological Process for KRTAP5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KRTAP5-AS1 Gene

Drugs & Compounds for KRTAP5-AS1 Gene

No Compound Related Data Available

Transcripts for KRTAP5-AS1 Gene

mRNA/cDNA for KRTAP5-AS1 Gene

(4) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(5) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for KRTAP5-AS1 Gene

No ASD Table

Relevant External Links for KRTAP5-AS1 Gene

GeneLoc Exon Structure for
KRTAP5-AS1
ECgene alternative splicing isoforms for
KRTAP5-AS1

Expression for KRTAP5-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for KRTAP5-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for KRTAP5-AS1 Gene

This gene is overexpressed in Skin - Not Sun Exposed (Suprapubic) (x7.8), Brain - Cerebellar Hemisphere (x6.8), and Brain - Cerebellum (x5.2).
genes like me logo Genes that share expression patterns with KRTAP5-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KRTAP5-AS1 Gene

Orthologs for KRTAP5-AS1 Gene

Evolution for KRTAP5-AS1 Gene

ENSEMBL:
Gene Tree for KRTAP5-AS1 (if available)
TreeFam:
Gene Tree for KRTAP5-AS1 (if available)

No data available for Orthologs for KRTAP5-AS1 Gene

Paralogs for KRTAP5-AS1 Gene

No data available for Paralogs for KRTAP5-AS1 Gene

Variants for KRTAP5-AS1 Gene

Sequence variations from dbSNP and Humsavar for KRTAP5-AS1 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000029971 -- 1,572,792(+) C/A/G/T non_coding_transcript_variant
rs1000050507 -- 1,599,360(+) A/G downstream_transcript_variant
rs1000104507 -- 1,586,645(+) T/G intron_variant
rs1000183870 -- 1,581,592(+) A/C/G intron_variant
rs1000258108 -- 1,578,043(+) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for KRTAP5-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2743945 CNV deletion 23290073
esv2761643 CNV gain 21179565
nsv1051627 CNV gain 25217958
nsv1129508 CNV tandem duplication 24896259
nsv481162 CNV novel sequence insertion 20440878
nsv552999 CNV gain 21841781
nsv975871 CNV duplication 23825009

Additional Variant Information for KRTAP5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KRTAP5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for KRTAP5-AS1 Gene

Disorders for KRTAP5-AS1 Gene

MalaCards: The human disease database

(2) MalaCards diseases for KRTAP5-AS1 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
astrocytoma
  • astrocytic tumor
hepatocellular carcinoma
  • hcc
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for KRTAP5-AS1

genes like me logo Genes that share disorders with KRTAP5-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for KRTAP5-AS1 Gene

Publications for KRTAP5-AS1 Gene

  1. Non-coding RNAs participate in the regulatory network of CLDN4 via ceRNA mediated miRNA evasion. (PMID: 28819095) Song YX … Wang ZN (Nature communications 2017) 2 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for KRTAP5-AS1 Gene

Sources for KRTAP5-AS1 Gene

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