KRTAP10-12 Gene (Protein Coding)

Keratin Associated Protein 10-12

GC21P044697
GIFtS:
25
See more...

Aliases for KRTAP10-12 Gene

Aliases for KRTAP10-12 Gene

  • Keratin Associated Protein 10-12 2 3 5
  • KRTAP18.12 2 3 4
  • KAP10.12 2 3 4
  • High Sulfur Keratin-Associated Protein 10.12 3 4
  • Keratin-Associated Protein 10-12 3 4
  • Keratin-Associated Protein 18-12 3 4
  • KRTAP18-12 3 4
  • Keratin Associated Protein 18-12 2
  • Keratin-Associated Protein 10.12 4
  • Keratin-Associated Protein 18.12 4
  • KRTAP10-12 5
  • KRTAP10.12 4
  • KAP18-12 4

External Ids for KRTAP10-12 Gene

Previous HGNC Symbols for KRTAP10-12 Gene

  • KRTAP18-12

Previous GeneCards Identifiers for KRTAP10-12 Gene

  • GC21P044942
  • GC21P046117
  • GC21P031491

Summaries for KRTAP10-12 Gene

GeneCards Summary for KRTAP10-12 Gene

KRTAP10-12 (Keratin Associated Protein 10-12) is a Protein Coding gene. Among its related pathways are Developmental Biology and Keratinization. An important paralog of this gene is KRTAP10-7.

UniProtKB/Swiss-Prot Summary for KRTAP10-12 Gene

  • In the hair cortex, hair keratin intermediate filaments are embedded in an interfilamentous matrix, consisting of hair keratin-associated proteins (KRTAP), which are essential for the formation of a rigid and resistant hair shaft through their extensive disulfide bond cross-linking with abundant cysteine residues of hair keratins. The matrix proteins include the high-sulfur and high-glycine-tyrosine keratins.

Additional gene information for KRTAP10-12 Gene

No data available for Entrez Gene Summary , CIViC Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for KRTAP10-12 Gene

Genomics for KRTAP10-12 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for KRTAP10-12 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH21J044697 Enhancer 0.8 Ensembl ENCODE 600.7 +0.9 929 1.8 GATAD2A TEAD4 TFE3 ZIC2 TEAD1 KDM6A ZFHX2 SAP130 POLR2A KLF17 KRTAP10-12 TSPEAR KRTAP10-13P
GH21J044695 Enhancer 0.3 Ensembl 600.7 -1.2 -1171 1.6 RAD21 CTCF KRTAP10-12 KRTAP12-6P KRTAP12-1 TSPEAR
GH21J044916 Promoter/Enhancer 2 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 2.7 +227.8 227842 17.6 RNF2 SP1 HNRNPL CREB1 ATF7 ZNF512 IKZF1 CTCF POLR2A BACH1 ITGB2-AS1 FAM207A ITGB2 POFUT2 UBE2G2 ENSG00000273027 TRPM2 PTTG1IP LINC01547 PWP2
GH21J045069 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 1.4 +376.2 376242 7.6 ARHGAP35 CREB1 ZBTB33 HNRNPL TEAD4 ZNF629 LEF1 SOX13 IKZF1 ZNF692 SSR4P1 ADARB1 LOC105372836 lnc-ITGB2-11 POFUT2 UBE2G2 ENSG00000184441 COL6A1 PWP2 ENSG00000224413
GH21J044656 Promoter/Enhancer 0.9 FANTOM5 Ensembl ENCODE 3.4 -39.0 -39013 2.9 KLF17 KLF1 KRTAP12-3 KRTAP10-1 KRTAP12-1 IMMTP1 KRTAP10-2 KRTAP10-12 KRTAP10-10 KRTAP12-4 lnc-KRTAP12-4-1 KRTAP12-2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around KRTAP10-12 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for KRTAP10-12

Top Transcription factor binding sites by QIAGEN in the KRTAP10-12 gene promoter:
  • AP-4
  • E47
  • Evi-1
  • HEN1
  • Ik-1
  • NF-kappaB1
  • POU2F1
  • RelA
  • Tal-1
  • YY1

Genomic Locations for KRTAP10-12 Gene

Genomic Locations for KRTAP10-12 Gene
chr21:44,697,172-44,698,044
(GRCh38/hg38)
Size:
873 bases
Orientation:
Plus strand
chr21:46,117,087-46,117,959
(GRCh37/hg19)
Size:
873 bases
Orientation:
Plus strand

Genomic View for KRTAP10-12 Gene

Genes around KRTAP10-12 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KRTAP10-12 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KRTAP10-12 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for KRTAP10-12 Gene

Proteins for KRTAP10-12 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for KRTAP10-12 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P60413-KR10C_HUMAN
    Recommended name:
    Keratin-associated protein 10-12
    Protein Accession:
    P60413
    Secondary Accessions:
    • B2RPA3

    Protein attributes for KRTAP10-12 Gene

    Size:
    245 amino acids
    Molecular mass:
    25107 Da
    Quaternary structure:
    • Interacts with hair keratins.

neXtProt entry for KRTAP10-12 Gene

Post-translational modifications for KRTAP10-12 Gene

No Post-translational modifications

Other Protein References for KRTAP10-12 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for KRTAP10-12 Gene

Domains & Families for KRTAP10-12 Gene

Gene Families for KRTAP10-12 Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for KRTAP10-12 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for KRTAP10-12 Gene

GenScript: Design optimal peptide antigens:
  • Keratin-associated protein 18.12 (KR10C_HUMAN)

Graphical View of Domain Structure for InterPro Entry

P60413

UniProtKB/Swiss-Prot:

KR10C_HUMAN :
  • Belongs to the KRTAP type 10 family.
Family:
  • Belongs to the KRTAP type 10 family.
genes like me logo Genes that share domains with KRTAP10-12: view

Function for KRTAP10-12 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Molecular function for KRTAP10-12 Gene

UniProtKB/Swiss-Prot Function:
In the hair cortex, hair keratin intermediate filaments are embedded in an interfilamentous matrix, consisting of hair keratin-associated proteins (KRTAP), which are essential for the formation of a rigid and resistant hair shaft through their extensive disulfide bond cross-linking with abundant cysteine residues of hair keratins. The matrix proteins include the high-sulfur and high-glycine-tyrosine keratins.

Phenotypes From GWAS Catalog for KRTAP10-12 Gene

genes like me logo Genes that share phenotypes with KRTAP10-12: view

Animal Model Products

CRISPR Products

miRNA for KRTAP10-12 Gene

miRTarBase miRNAs that target KRTAP10-12

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for KRTAP10-12

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for KRTAP10-12 Gene

Localization for KRTAP10-12 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for KRTAP10-12 gene
Compartment Confidence
cytosol 4
cytoskeleton 2
extracellular 1
peroxisome 1
nucleus 1

Gene Ontology (GO) - Cellular Components for KRTAP10-12 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005829 cytosol TAS --
GO:0005882 intermediate filament IEA --
GO:0045095 keratin filament IEA --
genes like me logo Genes that share ontologies with KRTAP10-12: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for KRTAP10-12 Gene

Pathways & Interactions for KRTAP10-12 Gene

PathCards logo

SuperPathways for KRTAP10-12 Gene

SuperPathway Contained pathways
1 Developmental Biology
Developmental Biology
.51
2 Keratinization
Keratinization
.33
genes like me logo Genes that share pathways with KRTAP10-12: view

Pathways by source for KRTAP10-12 Gene

2 Reactome pathways for KRTAP10-12 Gene

Interacting Proteins for KRTAP10-12 Gene

STRING Interaction Network Preview (showing top 5 STRING interactants - click image to see top 25)
STRING Interaction Network
Selected Interacting proteins: ENSP00000383216 for KRTAP10-12 Gene via STRING

GPS-Prot Interaction Network for KRTAP10-12

Gene Ontology (GO) - Biological Process for KRTAP10-12 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0031424 keratinization TAS --
genes like me logo Genes that share ontologies with KRTAP10-12: view

No data available for SIGNOR curated interactions for KRTAP10-12 Gene

Drugs & Compounds for KRTAP10-12 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for KRTAP10-12 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for KRTAP10-12 Gene

1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for KRTAP10-12

Alternative Splicing Database (ASD) splice patterns (SP) for KRTAP10-12 Gene

No ASD Table

Relevant External Links for KRTAP10-12 Gene

GeneLoc Exon Structure for
KRTAP10-12

Expression for KRTAP10-12 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for KRTAP10-12 Gene

mRNA expression in normal human tissues for KRTAP10-12 Gene
mRNA expression by GTEx for KRTAP10-12 Gene

mRNA differential expression in normal tissues according to GTEx for KRTAP10-12 Gene

This gene is overexpressed in Skin - Not Sun Exposed (Suprapubic) (x45.1) and Skin - Sun Exposed (Lower leg) (x6.9).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for KRTAP10-12

SOURCE GeneReport for Unigene cluster for KRTAP10-12 Gene:

Hs.297526

mRNA Expression by UniProt/SwissProt for KRTAP10-12 Gene:

P60413-KR10C_HUMAN
Tissue specificity: Restricted to a narrow region of the hair fiber cuticle, lying approximately 20 cell layers above the apex of the dermal papilla of the hair root; not detected in any other tissues.

Evidence on tissue expression from TISSUES for KRTAP10-12 Gene

  • Skin(4)
genes like me logo Genes that share expression patterns with KRTAP10-12: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and Phenotype-based relationships between genes and organs from Gene ORGANizer for KRTAP10-12 Gene

Orthologs for KRTAP10-12 Gene

This gene was present in the common ancestor of mammals.

Orthologs for KRTAP10-12 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
 Mammalia KRTAP10-12 30 31
  • 97.01 (n)
 OneToOne
Mouse
(Mus musculus)
 Mammalia Gm7137 31
  • 53 (a)
 ManyToMany
Dog
(Canis familiaris)
 Mammalia -- 31
  • 51 (a)
 ManyToMany
Cow
(Bos Taurus)
 Mammalia KRTAP10-8 31
  • 50 (a)
 ManyToMany
Platypus
(Ornithorhynchus anatinus)
 Mammalia -- 31
  • 48 (a)
 ManyToMany
-- 31
  • 35 (a)
 ManyToMany
Species where no ortholog for KRTAP10-12 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for KRTAP10-12 Gene

ENSEMBL:
Gene Tree for KRTAP10-12 (if available)
TreeFam:
Gene Tree for KRTAP10-12 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for KRTAP10-12: view image

Paralogs for KRTAP10-12 Gene

Paralogs for KRTAP10-12 Gene

(10) SIMAP similar genes for KRTAP10-12 Gene using alignment to 1 proteins:

  • KR10C_HUMAN
genes like me logo Genes that share paralogs with KRTAP10-12: view

Variants for KRTAP10-12 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for KRTAP10-12 Gene

SNP ID Clinical significance and condition Chr 21 pos Variation AA Info Type
rs34302939 - p.Gly226Ser
rs35076450 - p.Pro146Gln

Additional dbSNP identifiers (rs#s) for KRTAP10-12 Gene

Structural Variations from Database of Genomic Variants (DGV) for KRTAP10-12 Gene

Variant ID Type Subtype PubMed ID
esv2723675 CNV deletion 23290073
esv2723677 CNV deletion 23290073
nsv1120413 CNV tandem duplication 24896259
nsv587811 CNV loss 21841781

Variation tolerance for KRTAP10-12 Gene

Residual Variation Intolerance Score: 89.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 9.44; 88.63% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for KRTAP10-12 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KRTAP10-12

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for KRTAP10-12 Gene

Disorders for KRTAP10-12 Gene

Additional Disease Information for KRTAP10-12

ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform

No disorders were found for KRTAP10-12 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KRTAP10-12 Gene

Publications for KRTAP10-12 Gene

  1. A cluster of 21 keratin-associated protein genes within introns of another gene on human chromosome 21q22.3. (PMID: 15028290) Shibuya K … Shimizu N (Genomics 2004) 3 4
  2. The DNA sequence of human chromosome 21. (PMID: 10830953) Hattori M … Chromosome 21 mapping and sequencing consortium (Nature 2000) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4
  4. Hair keratin associated proteins: characterization of a second high sulfur KAP gene domain on human chromosome 21. (PMID: 14962103) Rogers MA … Schweizer J (The Journal of investigative dermatology 2004) 4
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

ExternalLinks

View latest publications for KRTAP10-12 gene in Mastermind

Products for KRTAP10-12 Gene

Sources for KRTAP10-12 Gene