Aliases for KRT87P Gene

Aliases for KRT87P Gene

  • Keratin 87 Pseudogene 2 3 5
  • Keratin, Hair, Basic Pseudogene 4 2 3 4
  • Keratin 121 Pseudogene 2 3
  • KRT121P 3 4
  • KRTHBP4 3 4
  • PsihHbD Hair Keratin Pseudogene 3
  • Putative Keratin-87 Protein 4
  • Keratin-81-Like Protein 3
  • Keratin-121 Pseudogene 4
  • PsihHbD 3
  • HBD 3

External Ids for KRT87P Gene

Previous HGNC Symbols for KRT87P Gene

  • KRTHBP4
  • KRT121P

Previous GeneCards Identifiers for KRT87P Gene

  • GC12M052646

Summaries for KRT87P Gene

GeneCards Summary for KRT87P Gene

KRT87P (Keratin 87 Pseudogene) is a Pseudogene. Gene Ontology (GO) annotations related to this gene include structural molecule activity.

Additional gene information for KRT87P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for KRT87P Gene

Genomics for KRT87P Gene

GeneHancer (GH) Regulatory Elements for KRT87P Gene

Promoters and enhancers for KRT87P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J052260 Enhancer 0.7 Ensembl 750.6 -1.7 -1734 2 SP7 PRDM1 ZNF680 PKNOX1 ZIC2 ZBTB8A ZNF561 ZXDB OSR2 RAD21 KRT87P KRT86 KRT81 SPRYD3 KRT88P
GH12J052258 Promoter 0.5 Ensembl 750.6 +0.3 266 0.4 EZH2 CTCF KRT87P KRT86
GH12J052259 Enhancer 0.2 Ensembl 750.6 -0.4 -434 0.2 KRT87P KRT88P KRT86
GH12J052277 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.9 -21.4 -21427 6 PPP1R10 ZNF785 CTCF SREBF1 ZBTB6 SMARCE1 POLR2A TCF7L2 ZNF217 HLF ENSG00000257830 lnc-KRT7-3 KRT86 ZNF740 HNRNPA3P10 CSAD ENSG00000257808 KRT80 KRT7 KRT87P
GH12J052196 Enhancer 1.6 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 11.7 +50.9 50934 22.5 ZNF785 SIN3A CTCF GATA3 SREBF1 POLR2A TCF7L2 USF2 ZNF217 MYC KRT7 ZNF740 POU6F1 HNRNPA3P10 KRT86 KRT87P KRT81 KRT83 ENSG00000257337 KRT7-AS
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around KRT87P on UCSC Golden Path with GeneCards custom track

Genomic Locations for KRT87P Gene

Genomic Locations for KRT87P Gene
chr12:52,250,466-52,258,867
(GRCh38/hg38)
Size:
8,402 bases
Orientation:
Minus strand
chr12:52,643,405-52,653,128
(GRCh37/hg19)
Size:
9,724 bases
Orientation:
Minus strand

Genomic View for KRT87P Gene

Genes around KRT87P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KRT87P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KRT87P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KRT87P Gene

Proteins for KRT87P Gene

  • Protein details for KRT87P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NCN2-KR87P_HUMAN
    Recommended name:
    Putative keratin-87 protein
    Protein Accession:
    A6NCN2
    Secondary Accessions:
    • B4DTA1

    Protein attributes for KRT87P Gene

    Size:
    255 amino acids
    Molecular mass:
    29117 Da
    Quaternary structure:
    • Heterotetramer of two type I and two type II keratins.
    Miscellaneous:
    • There are two types of hair/microfibrillar keratin, I (acidic) and II (neutral to basic).

neXtProt entry for KRT87P Gene

Post-translational modifications for KRT87P Gene

No Post-translational modifications

No data available for DME Specific Peptides for KRT87P Gene

Domains & Families for KRT87P Gene

Protein Domains for KRT87P Gene

Graphical View of Domain Structure for InterPro Entry

A6NCN2

UniProtKB/Swiss-Prot:

KR87P_HUMAN :
  • Belongs to the intermediate filament family.
Family:
  • Belongs to the intermediate filament family.
genes like me logo Genes that share domains with KRT87P: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for KRT87P Gene

Function for KRT87P Gene

Phenotypes From GWAS Catalog for KRT87P Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KRT87P Gene

Localization for KRT87P Gene

Gene Ontology (GO) - Cellular Components for KRT87P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005615 extracellular space HDA 23580065
GO:0045095 keratin filament IEA --
genes like me logo Genes that share ontologies with KRT87P: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for KRT87P Gene

Pathways & Interactions for KRT87P Gene

PathCards logo

SuperPathways for KRT87P Gene

No Data Available

Interacting Proteins for KRT87P Gene

Selected Interacting proteins: A6NCN2-KR87P_HUMAN for KRT87P Gene via IID

Symbol External ID(s) Details
IQCB1
STAT5A

Gene Ontology (GO) - Biological Process for KRT87P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KRT87P Gene

Drugs & Compounds for KRT87P Gene

No Compound Related Data Available

Transcripts for KRT87P Gene

mRNA/cDNA for KRT87P Gene

(3) Additional mRNA sequences :
(117) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for KRT87P Gene

No ASD Table

Relevant External Links for KRT87P Gene

GeneLoc Exon Structure for
KRT87P
ECgene alternative splicing isoforms for
KRT87P

Expression for KRT87P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for KRT87P Gene

mRNA differential expression in normal tissues according to GTEx for KRT87P Gene

This gene is overexpressed in Skin - Not Sun Exposed (Suprapubic) (x12.1), Minor Salivary Gland (x6.7), and Pancreas (x5.6).

Protein differential expression in normal tissues from HIPED for KRT87P Gene

This gene is overexpressed in Blymphocyte (19.9), Plasma (15.3), and Neutrophil (12.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for KRT87P Gene



Protein tissue co-expression partners for KRT87P Gene

NURSA nuclear receptor signaling pathways regulating expression of KRT87P Gene:

KRT87P
genes like me logo Genes that share expression patterns with KRT87P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KRT87P Gene

Orthologs for KRT87P Gene

Evolution for KRT87P Gene

ENSEMBL:
Gene Tree for KRT87P (if available)
TreeFam:
Gene Tree for KRT87P (if available)

No data available for Orthologs for KRT87P Gene

Paralogs for KRT87P Gene

No data available for Paralogs for KRT87P Gene

Variants for KRT87P Gene

Sequence variations from dbSNP and Humsavar for KRT87P Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000454570 -- 52,258,740(-) G/A upstream_transcript_variant
rs1000987130 -- 52,258,298(-) C/G/T non_coding_transcript_variant
rs1001379511 -- 52,252,254(-) G/A/C intron_variant
rs1002107844 -- 52,250,277(-) T/C/G downstream_transcript_variant
rs1002123480 -- 52,253,849(-) C/G intron_variant

Additional Variant Information for KRT87P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KRT87P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for KRT87P Gene

Disorders for KRT87P Gene

Additional Disease Information for KRT87P

No disorders were found for KRT87P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KRT87P Gene

Publications for KRT87P Gene

  1. The finished DNA sequence of human chromosome 12. (PMID: 16541075) Scherer SE … Baylor College of Medicine Human Genome Sequencing Center Sequence Production Team (Nature 2006) 3 4 56
  2. New consensus nomenclature for mammalian keratins. (PMID: 16831889) Schweizer J … Wright MW (The Journal of cell biology 2006) 2 3 56
  3. Characterization of a 300 kbp region of human DNA containing the type II hair keratin gene domain. (PMID: 10692104) Rogers MA … Schweizer J (The Journal of investigative dermatology 2000) 2 3 56
  4. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein MY … Mann M (Cell 2015) 3 56
  5. Shotgun proteomics reveals specific modulated protein patterns in tears of patients with primary open angle glaucoma naïve to therapy. (PMID: 23580065) Pieragostino D … Del Boccio P (Molecular bioSystems 2013) 3 56

Products for KRT87P Gene

Sources for KRT87P Gene