Aliases for KRT18P55 Gene

Aliases for KRT18P55 Gene

  • Keratin 18 Pseudogene 55 2 3 5

External Ids for KRT18P55 Gene

Previous GeneCards Identifiers for KRT18P55 Gene

  • GC17M026605
  • GC17M026606
  • GC17M026672
  • GC17M026863
  • GC17M026972
  • GC17M027116

Summaries for KRT18P55 Gene

GeneCards Summary for KRT18P55 Gene

KRT18P55 (Keratin 18 Pseudogene 55) is a Pseudogene. Diseases associated with KRT18P55 include Gastric Cancer.

Additional gene information for KRT18P55 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for KRT18P55 Gene

Genomics for KRT18P55 Gene

GeneHancer (GH) Regulatory Elements for KRT18P55 Gene

Promoters and enhancers for KRT18P55 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J028317 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 750.6 -1.9 -1905 4.6 ZBTB40 SP1 CTCF MLX RBPJ SMARCE1 POLR2A USF2 NR2F1 ATF1 TMEM97 KRT18P55 HSALNG0115452 piR-60264 LOC101927018 TMEM199 SUPT6H ENSG00000264577 ENSG00000264044 NUFIP2
GH17J028282 Enhancer 0.9 Ensembl ENCODE 0.3 +35.1 35082 2.2 ZNF362 ZNF280D ZNF384 MAFK SP7 ZSCAN21 ZBTB8A PRDM10 ZEB2 ZNF629 TMEM97 POLDIP2 SARM1 NOS2 L13714-198 piR-35163 lnc-IFT20-7 KRT18P55
GH17J028306 Promoter 0.5 Ensembl 0.4 +10.5 10483 0.2 ZBTB33 POLR2A lnc-IFT20-7 TMEM97 KRT18P55 piR-50443-159
GH17J028277 Enhancer 0.7 ENCODE 0.3 +39.4 39419 1.1 SMARCE1 ZNF148 CBFA2T2 MLLT1 SMARCA4 EGR1 IKZF1 TRIM22 IKZF2 HDAC1 piR-35163 TNFAIP1 IFT20 NOS2 L13714-198 lnc-IFT20-7 KRT18P55
GH17J028292 Enhancer 0.5 Ensembl 0.3 +24.1 24051 1.7 CC2D1A ZNF121 CREB1 RFX1 POLR2A TMEM97 SLC46A1 piR-50443-159 lnc-IFT20-7 KRT18P55
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around KRT18P55 on UCSC Golden Path with GeneCards custom track

Genomic Locations for KRT18P55 Gene

Genomic Locations for KRT18P55 Gene
chr17:28,275,986-28,317,783
(GRCh38/hg38)
Size:
41,798 bases
Orientation:
Minus strand
chr17:26,603,012-26,644,809
(GRCh37/hg19)
Size:
41,798 bases
Orientation:
Minus strand

Genomic View for KRT18P55 Gene

Genes around KRT18P55 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KRT18P55 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KRT18P55 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KRT18P55 Gene

Proteins for KRT18P55 Gene

Post-translational modifications for KRT18P55 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KRT18P55 Gene

Domains & Families for KRT18P55 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for KRT18P55 Gene

Function for KRT18P55 Gene

Phenotypes From GWAS Catalog for KRT18P55 Gene

genes like me logo Genes that share phenotypes with KRT18P55: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for KRT18P55

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KRT18P55 Gene

Localization for KRT18P55 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for KRT18P55 Gene

Pathways & Interactions for KRT18P55 Gene

PathCards logo

SuperPathways for KRT18P55 Gene

No Data Available

Gene Ontology (GO) - Biological Process for KRT18P55 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KRT18P55 Gene

Drugs & Compounds for KRT18P55 Gene

No Compound Related Data Available

Transcripts for KRT18P55 Gene

mRNA/cDNA for KRT18P55 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(7) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for KRT18P55

Alternative Splicing Database (ASD) splice patterns (SP) for KRT18P55 Gene

No ASD Table

Relevant External Links for KRT18P55 Gene

GeneLoc Exon Structure for
KRT18P55
ECgene alternative splicing isoforms for
KRT18P55

Expression for KRT18P55 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for KRT18P55 Gene

mRNA differential expression in normal tissues according to GTEx for KRT18P55 Gene

This gene is overexpressed in Testis (x53.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for KRT18P55 Gene



NURSA nuclear receptor signaling pathways regulating expression of KRT18P55 Gene:

KRT18P55

SOURCE GeneReport for Unigene cluster for KRT18P55 Gene:

Hs.371796
genes like me logo Genes that share expression patterns with KRT18P55: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KRT18P55 Gene

Orthologs for KRT18P55 Gene

Evolution for KRT18P55 Gene

ENSEMBL:
Gene Tree for KRT18P55 (if available)
TreeFam:
Gene Tree for KRT18P55 (if available)

No data available for Orthologs for KRT18P55 Gene

Paralogs for KRT18P55 Gene

No data available for Paralogs for KRT18P55 Gene

Variants for KRT18P55 Gene

Sequence variations from dbSNP and Humsavar for KRT18P55 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000024038 -- 28,299,595(-) G/A/C/T intron_variant
rs1000060631 -- 28,291,940(-) C/T intron_variant
rs1000099014 -- 28,292,175(-) C/T intron_variant
rs1000125647 -- 28,302,905(-) G/A intron_variant
rs1000159335 -- 28,299,358(-) /C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for KRT18P55 Gene

Variant ID Type Subtype PubMed ID
esv2715785 CNV deletion 23290073
nsv519330 CNV gain 19592680
nsv519388 CNV loss 19592680
nsv574653 CNV gain 21841781
nsv960455 CNV duplication 23825009

Additional Variant Information for KRT18P55 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KRT18P55

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for KRT18P55 Gene

Disorders for KRT18P55 Gene

MalaCards: The human disease database

(1) MalaCards diseases for KRT18P55 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
gastric cancer
  • gastric cancer, somatic
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for KRT18P55

genes like me logo Genes that share disorders with KRT18P55: view

No data available for UniProtKB/Swiss-Prot and Genatlas for KRT18P55 Gene

Publications for KRT18P55 Gene

  1. A genome-wide association meta-analysis identifies a novel locus at 17q11.2 associated with sporadic amyotrophic lateral sclerosis. (PMID: 24256812) Fogh I … SLAGEN Consortium and Collaborators (Human molecular genetics 2014) 3 56
  2. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose JE … Uhl GR (Molecular medicine (Cambridge, Mass.) 2010) 3 56
  3. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 3 56
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

Products for KRT18P55 Gene

Sources for KRT18P55 Gene