Aliases for KRT18P39 Gene

Aliases for KRT18P39 Gene

  • Keratin 18 Pseudogene 39 2 3 5

External Ids for KRT18P39 Gene

Previous GeneCards Identifiers for KRT18P39 Gene

  • GC02M204338
  • GC02M204628

Summaries for KRT18P39 Gene

GeneCards Summary for KRT18P39 Gene

KRT18P39 (Keratin 18 Pseudogene 39) is a Pseudogene.

Additional gene information for KRT18P39 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for KRT18P39 Gene

Genomics for KRT18P39 Gene

GeneHancer (GH) Regulatory Elements for KRT18P39 Gene

Promoters and enhancers for KRT18P39 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J203763 Enhancer 0.7 Ensembl ENCODE dbSUPER 506.2 +0.7 731 4.2 CTCF RAD21 PKNOX1 KRT18P39 CD28 RF00017-3409
GH02J203781 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 19 -20.6 -20569 10.4 EP300 FOXK2 CTCF POLR2G USF1 NCOR1 JUND FOS KDM6A TCF7 piR-33735-049 piR-39099-141 KRT18P39 RAPH1 CD28 CYP20A1 RF00026-611 RNU6-474P RF00017-3410
GH02J203737 Enhancer 0.9 FANTOM5 ENCODE dbSUPER 17.8 +24.2 24216 7.2 FOS CEBPB GATA2 GATA3 NR3C1 CTCF SOX6 ZSCAN4 CD28 KRT18P39 ICOS RNU6-474P RAPH1 CTLA4 RF00017-3409 HSALNG0021688
GH02J203867 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE dbSUPER 6 -104.1 -104100 5.1 EP300 JUND RELA MEF2C TRIM22 BCL11A TCF12 CBFB MEF2B BATF CTLA4 HSALNG0021699 KRT18P39 piR-52008-011
GH02J203717 Enhancer 1.1 FANTOM5 ENCODE dbSUPER 7.6 +45.4 45395 6.2 TRIM28 ZBTB25 TEAD1 RBM25 NR2F2 FOXA2 USF1 FOXP1 TAL1 FOXA1 HSALNG0021688 CD28 ICOS RAPH1 RNU6-474P KRT18P39 CTLA4 CARF CYP20A1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around KRT18P39 on UCSC Golden Path with GeneCards custom track

Genomic Locations for KRT18P39 Gene

Genomic Locations for KRT18P39 Gene
chr2:203,764,233-203,765,632
(GRCh38/hg38)
Size:
1,400 bases
Orientation:
Minus strand
chr2:204,628,956-204,630,355
(GRCh37/hg19)
Size:
1,400 bases
Orientation:
Minus strand

Genomic View for KRT18P39 Gene

Genes around KRT18P39 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KRT18P39 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KRT18P39 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KRT18P39 Gene

Proteins for KRT18P39 Gene

Post-translational modifications for KRT18P39 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KRT18P39 Gene

Domains & Families for KRT18P39 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for KRT18P39 Gene

Function for KRT18P39 Gene

Phenotypes From GWAS Catalog for KRT18P39 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KRT18P39 Gene

Localization for KRT18P39 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for KRT18P39 Gene

Pathways & Interactions for KRT18P39 Gene

PathCards logo

SuperPathways for KRT18P39 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for KRT18P39 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for KRT18P39 Gene

Drugs & Compounds for KRT18P39 Gene

No Compound Related Data Available

Transcripts for KRT18P39 Gene

mRNA/cDNA for KRT18P39 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for KRT18P39 Gene

No ASD Table

Relevant External Links for KRT18P39 Gene

GeneLoc Exon Structure for
KRT18P39

Expression for KRT18P39 Gene

No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KRT18P39 Gene

Orthologs for KRT18P39 Gene

Evolution for KRT18P39 Gene

ENSEMBL:
Gene Tree for KRT18P39 (if available)
TreeFam:
Gene Tree for KRT18P39 (if available)

No data available for Orthologs for KRT18P39 Gene

Paralogs for KRT18P39 Gene

No data available for Paralogs for KRT18P39 Gene

Variants for KRT18P39 Gene

Additional Variant Information for KRT18P39 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KRT18P39

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for KRT18P39 Gene

Disorders for KRT18P39 Gene

Additional Disease Information for KRT18P39

Genetic Association Database
(GAD)

No disorders were found for KRT18P39 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KRT18P39 Gene

Publications for KRT18P39 Gene

  1. A genome-wide association study identifies two new risk loci for Graves' disease. (PMID: 21841780) Chu X … China Consortium for Genetics of Autoimmune Thyroid Disease (Nature genetics 2011) 41 54
  2. Genome-wide association study in alopecia areata implicates both innate and adaptive immunity. (PMID: 20596022) Petukhova L … Christiano AM (Nature 2010) 41 54
  3. REL, encoding a member of the NF-kappaB family of transcription factors, is a newly defined risk locus for rheumatoid arthritis. (PMID: 19503088) Gregersen PK … Siminovitch KA (Nature genetics 2009) 41 54

Products for KRT18P39 Gene

Sources for KRT18P39 Gene