Aliases for KRT17P1 Gene

Aliases for KRT17P1 Gene

  • Keratin 17 Pseudogene 1 2 3 5
  • KRT17P1 5

External Ids for KRT17P1 Gene

Previous GeneCards Identifiers for KRT17P1 Gene

  • GC00U990190
  • GC17U900839
  • GC17M016684
  • GC17M016744

Summaries for KRT17P1 Gene

GeneCards Summary for KRT17P1 Gene

KRT17P1 (Keratin 17 Pseudogene 1) is a Pseudogene.

Additional gene information for KRT17P1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for KRT17P1 Gene

Genomics for KRT17P1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for KRT17P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J016845 Promoter 0.3 Ensembl 250.7 +0.7 680 1.2 KRT17P1 lnc-TNFRSF13B-8 piR-31193-001 TNFRSF13B ENSG00000266302
GH17J016749 Promoter/Enhancer 0.8 EPDnew Ensembl 5.3 +95.2 95194 3.2 CTCF TRIM22 ZNF316 MAZ ZNF211 ZNF654 CCDC144A RAI1 KRT16P6 NEK4P2 KRT17P1 UPF3AP1 piR-56580-011 ENSG00000266302 TNFRSF13B
GH17J016905 Enhancer 0.7 Ensembl ENCODE 4.9 -60.2 -60219 3 FEZF1 ZNF146 MAFK FOXA1 JUND ZNF133 POLR2A SPI1 FOS EP300 HSALNG0114901 KRT17P4 KRT16P2 KRT17P1 HSALNG0114900 HSALNG0114896 TNFRSF13B ENSG00000266302
GH17J016770 Enhancer 0.2 Ensembl 6 +75.1 75080 0.4 KRT17P1 piR-38344-053 piR-56580-011 ENSG00000266302 CCDC144A TNFRSF13B
GH17J016850 Enhancer 0.2 Ensembl 0.7 -4.4 -4420 0.6 KRT17P1 KRT17P4 lnc-TNFRSF13B-9 TNFRSF13B ENSG00000266302
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around KRT17P1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for KRT17P1 Gene

Latest Assembly
chr17:16,840,787-16,845,881
(GRCh38/hg38)
Size:
5,095 bases
Orientation:
Minus strand

Previous Assembly
chr17:16,744,101-16,749,186
(GRCh37/hg19 by Entrez Gene)
Size:
5,086 bases
Orientation:
Minus strand

chr17:16,744,057-16,749,197
(GRCh37/hg19 by Ensembl)
Size:
5,141 bases
Orientation:
Minus strand

Genomic View for KRT17P1 Gene

Genes around KRT17P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KRT17P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KRT17P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KRT17P1 Gene

Proteins for KRT17P1 Gene

Post-translational modifications for KRT17P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KRT17P1 Gene

Domains & Families for KRT17P1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for KRT17P1 Gene

Function for KRT17P1 Gene

Phenotypes for KRT17P1 Gene

genes like me logo Genes that share phenotypes with KRT17P1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KRT17P1 Gene

Localization for KRT17P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for KRT17P1 Gene

Pathways & Interactions for KRT17P1 Gene

PathCards logo

SuperPathways for KRT17P1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for KRT17P1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for KRT17P1 Gene

Drugs & Compounds for KRT17P1 Gene

No Compound Related Data Available

Transcripts for KRT17P1 Gene

mRNA/cDNA for KRT17P1 Gene

1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
5 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for KRT17P1 Gene

No ASD Table

Relevant External Links for KRT17P1 Gene

GeneLoc Exon Structure for
KRT17P1

Expression for KRT17P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for KRT17P1 Gene

mRNA differential expression in normal tissues according to GTEx for KRT17P1 Gene

This gene is overexpressed in Brain - Cortex (x16.2), Brain - Frontal Cortex (BA9) (x10.1), Brain - Anterior cingulate cortex (BA24) (x4.3), and Brain - Hippocampus (x4.2).

Protein differential expression in normal tissues from HIPED for KRT17P1 Gene

This gene is overexpressed in Skin (37.1), Brain (11.2), Heart (10.2), and Saliva (7.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for KRT17P1 Gene



Protein tissue co-expression partners for KRT17P1 Gene

- Elite partner
genes like me logo Genes that share expression patterns with KRT17P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KRT17P1 Gene

Orthologs for KRT17P1 Gene

Evolution for KRT17P1 Gene

ENSEMBL:
Gene Tree for KRT17P1 (if available)
TreeFam:
Gene Tree for KRT17P1 (if available)

No data available for Orthologs for KRT17P1 Gene

Paralogs for KRT17P1 Gene

No data available for Paralogs for KRT17P1 Gene

Variants for KRT17P1 Gene

Additional Variant Information for KRT17P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KRT17P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for KRT17P1 Gene

Disorders for KRT17P1 Gene

No disorders were found for KRT17P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for KRT17P1 Gene

Publications for KRT17P1 Gene

  1. Characterization of the human gene encoding cytokeratin 17 and its expression pattern. (PMID: 1281771) Troyanovsky SM … Franke WW (European journal of cell biology 1992) 2 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  3. Structure and evolution of the Smith-Magenis syndrome repeat gene clusters, SMS-REPs. (PMID: 11997339) Park SS … Lupski JR (Genome research 2002) 3

Products for KRT17P1 Gene

Sources for KRT17P1 Gene