Aliases for KRT16P2 Gene

Aliases for KRT16P2 Gene

  • Keratin 16 Pseudogene 2 2 3 5
  • KRT16P2 5

External Ids for KRT16P2 Gene

Previous GeneCards Identifiers for KRT16P2 Gene

  • GC17M016734

Summaries for KRT16P2 Gene

GeneCards Summary for KRT16P2 Gene

KRT16P2 (Keratin 16 Pseudogene 2) is a Pseudogene.

Additional gene information for KRT16P2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for KRT16P2 Gene

Genomics for KRT16P2 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for KRT16P2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J016833 Enhancer 0.2 Ensembl 250.7 -0.2 -208 0.9 KRT16P2 LOC105371551 lnc-CCDC144A-4 piR-31193-001 TNFRSF13B ENSG00000266302
GH17J016746 Promoter 0.7 Ensembl 7.4 +86.5 86532 1.4 ZIC2 ZNF341 GLIS1 ZNF398 ZNF18 L3MBTL2 GLIS2 HIC1 ZBTB26 ZNF335 UPF3AP1 lnc-ZNF624-4 KRT16P2 KRT16P6 L13714-191 ENSG00000266302 CCDC144A TNFRSF13B
GH17J016666 Promoter 0.9 EPDnew Ensembl 4.7 +165.4 165433 1.6 EZH2 USF2 USF1 SIN3A NEK4P2 CCDC144A lnc-ZNF624-2 ZNF624 KRT16P2 piR-43107-115 HSALNG0114877 ENSG00000266302
GH17J016905 Enhancer 0.7 Ensembl ENCODE 6 -73.3 -73267 3 FEZF1 ZNF146 MAFK FOXA1 JUND ZNF133 POLR2A SPI1 FOS EP300 HSALNG0114901 KRT17P4 KRT16P2 KRT17P1 HSALNG0114900 HSALNG0114896 TNFRSF13B ENSG00000266302
GH17J016872 Enhancer 0.6 ENCODE 5.6 -40.4 -40406 1.3 CTCF ZIC2 REST RXRA SMC3 RAD21 HNF4A ZNF143 GLIS1 KLF16 KRT17P4 KRT16P2 HSALNG0114897 HSALNG0114896 TNFRSF13B ENSG00000266302
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around KRT16P2 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for KRT16P2 Gene

Latest Assembly
chr17:16,829,999-16,832,833
(GRCh38/hg38)
Size:
2,835 bases
Orientation:
Minus strand

Previous Assembly
chr17:16,733,797-16,736,147
(GRCh37/hg19 by Entrez Gene)
Size:
2,351 bases
Orientation:
Minus strand

chr17:16,733,313-16,736,147
(GRCh37/hg19 by Ensembl)
Size:
2,835 bases
Orientation:
Minus strand

Genomic View for KRT16P2 Gene

Genes around KRT16P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KRT16P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KRT16P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KRT16P2 Gene

Proteins for KRT16P2 Gene

Post-translational modifications for KRT16P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KRT16P2 Gene

Domains & Families for KRT16P2 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for KRT16P2 Gene

Function for KRT16P2 Gene

Phenotypes From GWAS Catalog for KRT16P2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KRT16P2 Gene

Localization for KRT16P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for KRT16P2 Gene

Pathways & Interactions for KRT16P2 Gene

PathCards logo

SuperPathways for KRT16P2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for KRT16P2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for KRT16P2 Gene

Drugs & Compounds for KRT16P2 Gene

No Compound Related Data Available

Transcripts for KRT16P2 Gene

mRNA/cDNA for KRT16P2 Gene

1 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for KRT16P2 Gene

No ASD Table

Relevant External Links for KRT16P2 Gene

GeneLoc Exon Structure for
KRT16P2

Expression for KRT16P2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for KRT16P2 Gene

mRNA differential expression in normal tissues according to GTEx for KRT16P2 Gene

This gene is overexpressed in Lung (x13.9), Esophagus - Mucosa (x13.9), Liver (x8.9), and Vagina (x4.8).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for KRT16P2

SOURCE GeneReport for Unigene cluster for KRT16P2 Gene:

Hs.723586
genes like me logo Genes that share expression patterns with KRT16P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KRT16P2 Gene

Orthologs for KRT16P2 Gene

Evolution for KRT16P2 Gene

ENSEMBL:
Gene Tree for KRT16P2 (if available)
TreeFam:
Gene Tree for KRT16P2 (if available)

No data available for Orthologs for KRT16P2 Gene

Paralogs for KRT16P2 Gene

No data available for Paralogs for KRT16P2 Gene

Variants for KRT16P2 Gene

Structural Variations from Database of Genomic Variants (DGV) for KRT16P2 Gene

Variant ID Type Subtype PubMed ID
esv2635467 CNV loss 19546169
esv2758676 CNV gain+loss 17122850
esv3892974 CNV loss 25118596
nsv1141300 CNV duplication 24896259
nsv1160457 CNV duplication 26073780
nsv155 OTHER inversion 15895083
nsv574522 CNV loss 21841781
nsv833378 CNV gain 17160897
nsv833379 CNV gain 17160897
nsv9498 CNV gain+loss 18304495
nsv978374 CNV duplication 23825009

Additional Variant Information for KRT16P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KRT16P2

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance and Variation tolerance for KRT16P2 Gene

Disorders for KRT16P2 Gene

Additional Disease Information for KRT16P2

No disorders were found for KRT16P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KRT16P2 Gene

Publications for KRT16P2 Gene

  1. A group of type I keratin genes on human chromosome 17: characterization and expression. (PMID: 2451124) Rosenberg M … Fuchs E (Molecular and cellular biology 1988) 3

Products for KRT16P2 Gene

Sources for KRT16P2 Gene