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KRT16P2 Gene(Pseudogene)

Keratin 16 Pseudogene 2

GCID:
GC17M016829
GIFtS:
14
Genes Participants
UDN Logo

Aliases for KRT16P2 Gene

Aliases for KRT16P2 Gene

  • Keratin 16 Pseudogene 2 2 3 5

External Ids for KRT16P2 Gene

Previous GeneCards Identifiers for KRT16P2 Gene

  • GC17M016734

Summaries for KRT16P2 Gene

GeneCards Summary for KRT16P2 Gene

KRT16P2 (Keratin 16 Pseudogene 2) is a Pseudogene.

Additional gene information for KRT16P2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KRT16P2 Gene

Genomics for KRT16P2 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for KRT16P2 Gene

Promoters and enhancers for KRT16P2 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH17I016872 Enhancer 0.6 ENCODE 5.6 -40.4 -40406 1.3 CTCF ZNF654 RXRA REST ZIC2 RAD21 CTBP1 KLF16 GLIS1 ZNF143 KRT17P4 KRT16P2 ENSG00000283033 LOC101929105
GH17I016905 Enhancer 0.5 ENCODE 5.9 -73.2 -73189 0.2 GATA3 JUND POLR2A ZNF133 FEZF1 FOS FOXA1 KRT17P4 KRT16P2 ENSG00000265853 TBC1D27P
GH17I016666 Enhancer 0.5 Ensembl 4.7 +165.7 165680 1 USF1 USF2 SIN3A EZH2 NEK4P2 ZNF624 KRT16P2 RNASEH1P2
GH17I016856 Enhancer 0.4 dbSUPER 5.1 -24.9 -24876 1.5 ZIC2 ZNF623 PIR46443 KRT17P4 KRT16P2 ENSG00000283033
GH17I016893 Enhancer 0.4 FANTOM5 4.8 -60.7 -60683 0.3 L3MBTL2 MGA ENSG00000265853 KRT16P2 CCDC144A COPS3 TBC1D27P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around KRT16P2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for KRT16P2 Gene

Genomic Locations for KRT16P2 Gene
chr17:16,829,999-16,832,833
(GRCh38/hg38)
Size:
2,835 bases
Orientation:
Minus strand
chr17:16,733,313-16,736,147
(GRCh37/hg19)

Genomic View for KRT16P2 Gene

Genes around KRT16P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KRT16P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KRT16P2 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for KRT16P2 Gene

Proteins for KRT16P2 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for KRT16P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KRT16P2 Gene

Domains & Families for KRT16P2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KRT16P2 Gene

Function for KRT16P2 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KRT16P2 Gene

Localization for KRT16P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for KRT16P2 Gene

Pathways & Interactions for KRT16P2 Gene

SuperPathways for KRT16P2 Gene

PathCards logo More details on SuperPathways for KRT16P2
No Data Available

Interacting Proteins for KRT16P2 Gene

Gene Ontology (GO) - Biological Process for KRT16P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KRT16P2 Gene

Drugs & Compounds for KRT16P2 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for KRT16P2 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for KRT16P2 Gene

(2) Additional mRNA sequences :
(7) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for KRT16P2 Gene

Keratin 16 pseudogene 2:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for KRT16P2 Gene

No ASD Table

Relevant External Links for KRT16P2 Gene

GeneLoc Exon Structure for
KRT16P2
ECgene alternative splicing isoforms for
KRT16P2

Expression for KRT16P2 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for KRT16P2 Gene

mRNA expression in normal human tissues for KRT16P2 Gene
mRNA expression by GTEx for KRT16P2 Gene

mRNA differential expression in normal tissues according to GTEx for KRT16P2 Gene

This gene is overexpressed in Lung (x13.9), Esophagus - Mucosa (x13.9), Liver (x8.9), and Vagina (x4.8).

NURSA nuclear receptor signaling pathways regulating expression of KRT16P2 Gene:

KRT16P2

SOURCE GeneReport for Unigene cluster for KRT16P2 Gene:

Hs.723586
genes like me logo Genes that share expression patterns with KRT16P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KRT16P2 Gene

Orthologs for KRT16P2 Gene

Evolution for KRT16P2 Gene

ENSEMBL:
Gene Tree for KRT16P2 (if available)
TreeFam:
Gene Tree for KRT16P2 (if available)

No data available for Orthologs for KRT16P2 Gene

Paralogs for KRT16P2 Gene

No data available for Paralogs for KRT16P2 Gene

Variants for KRT16P2 Gene

Sequence variations from dbSNP and Humsavar for KRT16P2 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1004038158 -- 16,832,435(-) AAGCCACCACCCAAGCCA/AAGCCA non_coding_transcript_variant
rs1004409491 -- 16,831,869(-) C/A intron_variant
rs1010892567 -- 16,831,684(-) A/T intron_variant
rs1013002883 -- 16,832,474(-) C/T non_coding_transcript_variant
rs1016362207 -- 16,829,984(-) A/AA downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for KRT16P2 Gene

Variant ID Type Subtype PubMed ID
nsv978374 CNV duplication 23825009
nsv9498 CNV gain+loss 18304495
nsv833379 CNV gain 17160897
nsv833378 CNV gain 17160897
nsv574522 CNV loss 21841781
nsv155 OTHER inversion 15895083
nsv1160457 CNV duplication 26073780
nsv1141300 CNV duplication 24896259
esv3892974 CNV loss 25118596
esv2758676 CNV gain+loss 17122850
esv2635467 CNV loss 19546169

Additional Variant Information for KRT16P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KRT16P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for KRT16P2 Gene

Disorders for KRT16P2 Gene

Additional Disease Information for KRT16P2

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for KRT16P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KRT16P2 Gene

Publications for KRT16P2 Gene

  1. A group of type I keratin genes on human chromosome 17: characterization and expression. (PMID: 2451124) Rosenberg M … Fuchs E (Molecular and cellular biology 1988) 3

Products for KRT16P2 Gene

Sources for KRT16P2 Gene

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