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Aliases for KRBA1 Gene

Aliases for KRBA1 Gene

  • KRAB-A Domain Containing 1 2 3 5
  • KRAB A Domain Containing 1 2
  • KIAA1862 4

External Ids for KRBA1 Gene

Previous GeneCards Identifiers for KRBA1 Gene

  • GC07P149043
  • GC07P149411
  • GC07P143488

Summaries for KRBA1 Gene

GeneCards Summary for KRBA1 Gene

KRBA1 (KRAB-A Domain Containing 1) is a Protein Coding gene. Among its related pathways are Gene Expression. Gene Ontology (GO) annotations related to this gene include nucleic acid binding.

Additional gene information for KRBA1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KRBA1 Gene

Genomics for KRBA1 Gene

GeneHancer (GH) Regulatory Elements for KRBA1 Gene

Promoters and enhancers for KRBA1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I149714 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 558 +1.1 1071 3.4 HDGF PKNOX1 ATF1 ARID4B GLI4 ZNF2 ETS1 ZNF766 ZNF213 ZNF143 KRBA1 ZNF212 ZNF783 ZNF398 ENSG00000271664 LOC155060 ZNF282 ZNF777 ZNF767P ZNF746
GH07I149718 Promoter/Enhancer 0.7 EPDnew dbSUPER 550.8 +3.7 3738 0.1 GC07M149707 KRBA1 GC07M149505
GH07I149741 Enhancer 1.1 Ensembl ENCODE 11.5 +27.4 27398 1.2 HDGF ATF1 ZFP64 ARID4B ZNF2 ZNF213 ARID2 ZNF143 ATF7 NCOA1 SSPO ZNF467 KRBA1 ZNF862 GC07M149707 GC07M149505
GH07I149720 Enhancer 0.8 ENCODE dbSUPER 7.1 +6.4 6363 0.4 NR2F1 MAX MNT DPF2 ZIC2 IKZF1 TARDBP CREB1 IKZF2 SSPO ZNF862 KRBA1 GC07M149707 GC07M149505
GH07I149662 Enhancer 0.8 ENCODE 6.6 -51.8 -51786 1 ELF3 RB1 MZF1 ZNF2 RAD21 ARID2 ZNF143 KLF7 CREM ZNF654 GC07P149665 SSPO ZNF862 KRBA1 GC07P149650 GC07P149652 GC07P149653 GC07P149655 GC07P149654 GC07M149505
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around KRBA1 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the KRBA1 gene promoter:

Genomic Locations for KRBA1 Gene

Genomic Locations for KRBA1 Gene
19,795 bases
Plus strand

Genomic View for KRBA1 Gene

Genes around KRBA1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KRBA1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KRBA1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KRBA1 Gene

Proteins for KRBA1 Gene

  • Protein details for KRBA1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Protein KRBA1
    Protein Accession:
    Secondary Accessions:
    • A7E2F5
    • E7ENE9
    • Q8N4X0
    • Q96JG5

    Protein attributes for KRBA1 Gene

    1030 amino acids
    Molecular mass:
    107498 Da
    Quaternary structure:
    No Data Available
    • Sequence=BAB47491.2; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

    Alternative splice isoforms for KRBA1 Gene


neXtProt entry for KRBA1 Gene

Post-translational modifications for KRBA1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KRBA1 Gene

Domains & Families for KRBA1 Gene

Gene Families for KRBA1 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for KRBA1 Gene


Suggested Antigen Peptide Sequences for KRBA1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with KRBA1: view

No data available for UniProtKB/Swiss-Prot for KRBA1 Gene

Function for KRBA1 Gene

Gene Ontology (GO) - Molecular Function for KRBA1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
GO:0003676 nucleic acid binding IEA --
genes like me logo Genes that share ontologies with KRBA1: view
genes like me logo Genes that share phenotypes with KRBA1: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for KRBA1 Gene

Localization for KRBA1 Gene

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for KRBA1 gene
Compartment Confidence
cytosol 3
extracellular 2
nucleus 2

Subcellular locations from the

Human Protein Atlas (HPA)
  • Cytosol (2)
  • Nucleus (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for KRBA1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
GO:0005622 intracellular IEA --
genes like me logo Genes that share ontologies with KRBA1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for KRBA1 Gene

Pathways & Interactions for KRBA1 Gene

SuperPathways for KRBA1 Gene

SuperPathway Contained pathways
1 Gene Expression
genes like me logo Genes that share pathways with KRBA1: view

Pathways by source for KRBA1 Gene

2 Reactome pathways for KRBA1 Gene

Interacting Proteins for KRBA1 Gene

Selected Interacting proteins: A5PL33-KRBA1_HUMAN for KRBA1 Gene via IID

Gene Ontology (GO) - Biological Process for KRBA1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006355 regulation of transcription, DNA-templated IEA --
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with KRBA1: view

No data available for SIGNOR curated interactions for KRBA1 Gene

Drugs & Compounds for KRBA1 Gene

No Compound Related Data Available

Transcripts for KRBA1 Gene

Unigene Clusters for KRBA1 Gene

KRAB-A domain containing 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for KRBA1 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b ^ 5a · 5b ^ 6a · 6b ^ 7a · 7b ^ 8a · 8b ^ 9 ^ 10a · 10b ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18a · 18b ^ 19 ^
SP5: -

ExUns: 20

Relevant External Links for KRBA1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for KRBA1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for KRBA1 Gene

mRNA differential expression in normal tissues according to GTEx for KRBA1 Gene

This gene is overexpressed in Heart - Atrial Appendage (x4.5).

Protein differential expression in normal tissues from HIPED for KRBA1 Gene

This gene is overexpressed in Prostate (53.2) and Stomach (10.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for KRBA1 Gene

NURSA nuclear receptor signaling pathways regulating expression of KRBA1 Gene:


SOURCE GeneReport for Unigene cluster for KRBA1 Gene:


mRNA Expression by UniProt/SwissProt for KRBA1 Gene:

Tissue specificity: Expressed in brain (cerebellum).

Evidence on tissue expression from TISSUES for KRBA1 Gene

  • Nervous system(2.5)
genes like me logo Genes that share expression patterns with KRBA1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein tissue co-expression partners and Phenotype-based relationships between genes and organs from Gene ORGANizer for KRBA1 Gene

Orthologs for KRBA1 Gene

This gene was present in the common ancestor of mammals.

Orthologs for KRBA1 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia KRBA1 34 33
  • 98.9 (n)
(Canis familiaris)
Mammalia KRBA1 34 33
  • 76.68 (n)
(Bos Taurus)
Mammalia KRBA1 33 34
  • 74.52 (n)
(Mus musculus)
Mammalia Krba1 33 16 34
  • 71.74 (n)
(Rattus norvegicus)
Mammalia Krba1 33
  • 71.69 (n)
(Monodelphis domestica)
Mammalia KRBA1 34
  • 33 (a)
Species where no ortholog for KRBA1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for KRBA1 Gene

Gene Tree for KRBA1 (if available)
Gene Tree for KRBA1 (if available)

Paralogs for KRBA1 Gene

No data available for Paralogs for KRBA1 Gene

Variants for KRBA1 Gene

Sequence variations from dbSNP and Humsavar for KRBA1 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000044972 -- 149,722,923(+) G/C coding_sequence_variant, missense_variant, non_coding_transcript_variant
rs1000195679 -- 149,715,788(+) G/A intron_variant
rs1000542714 -- 149,715,509(+) G/T intron_variant
rs1000683299 -- 149,732,075(+) T/C intron_variant
rs1000697953 -- 149,731,725(+) A/C/G coding_sequence_variant, missense_variant, non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for KRBA1 Gene

Variant ID Type Subtype PubMed ID
nsv831184 CNV gain 17160897
nsv608979 CNV loss 21841781
nsv469576 CNV loss 16826518
nsv1021849 CNV gain 25217958
esv3576480 CNV gain 25503493
dgv1335e214 CNV loss 21293372

Variation tolerance for KRBA1 Gene

Gene Damage Index Score: 5.61; 72.52% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for KRBA1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for KRBA1 Gene

Disorders for KRBA1 Gene

Additional Disease Information for KRBA1

No disorders were found for KRBA1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KRBA1 Gene

Publications for KRBA1 Gene

  1. Prediction of the coding sequences of unidentified human genes. XX. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PMID: 11347906) Nagase T … Ohara O (DNA research : an international journal for rapid publication of reports on genes and genomes 2001) 3 4 58
  2. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 58
  3. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin EL … Gygi SP (Cell 2015) 3 58
  4. Toward a comprehensive characterization of a human cancer cell phosphoproteome. (PMID: 23186163) Zhou H … Mohammed S (Journal of proteome research 2013) 4 58
  5. Toward an understanding of the protein interaction network of the human liver. (PMID: 21988832) Wang J … Yang X (Molecular systems biology 2011) 3 58

Products for KRBA1 Gene

Sources for KRBA1 Gene

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