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The protein encoded by this gene is a transcription factor that binds to GC box elements located in the promoter. Binding of the encoded protein to a single GC box inhibits mRNA expression while binding to tandemly repeated GC box elements activates transcription. [provided by RefSeq, Jul 2008] See more...
Aliases for KLF9 Gene
Aliases for KLF9 Gene
External Ids for KLF9 Gene
- HGNC: 1123
- Entrez Gene: 687
- Ensembl: ENSG00000119138
- OMIM: 602902
- UniProtKB: Q13886
Previous HGNC Symbols for KLF9 Gene
- BTEB1
Previous GeneCards Identifiers for KLF9 Gene
- GC09M070230
- GC09M072189
- GC09M072999
- GC09M042839
Summaries for KLF9 Gene
-
The protein encoded by this gene is a transcription factor that binds to GC box elements located in the promoter. Binding of the encoded protein to a single GC box inhibits mRNA expression while binding to tandemly repeated GC box elements activates transcription. [provided by RefSeq, Jul 2008]
GeneCards Summary for KLF9 Gene
KLF9 (Kruppel Like Factor 9) is a Protein Coding gene. Diseases associated with KLF9 include Endometrial Cancer and Otosclerosis. Among its related pathways are Diurnally Regulated Genes with Circadian Orthologs and Circadian rythm related genes. Gene Ontology (GO) annotations related to this gene include DNA-binding transcription factor activity. An important paralog of this gene is KLF13.
UniProtKB/Swiss-Prot Summary for KLF9 Gene
-
Transcription factor that binds to GC box promoter elements. Selectively activates mRNA synthesis from genes containing tandem repeats of GC boxes but represses genes with a single GC box. Acts as an epidermal circadian transcription factor regulating keratinocyte proliferation (PubMed:22711835).
Additional gene information for KLF9 Gene
- HGNC(1123)
- Entrez Gene(687)
- Ensembl(ENSG00000119138)
- OMIM(602902)
- UniProtKB(Q13886)
- Open Targets Platform(ENSG00000119138)
- Monarch Initiative
- Search for KLF9 at DataMed
- Search for KLF9 at HumanCyc
No data available for CIViC Summary , Tocris Summary , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for KLF9 Gene
Genomics for KLF9 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for KLF9 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around KLF9 on the GeneHancer Hub at the UCSC Golden Path
Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for KLF9
- Top Transcription factor binding sites by QIAGEN in the KLF9 gene promoter:
-
- ARP-1
- CBF(2)
- E2F
- E2F-1
- E2F-2
- E2F-3a
- E2F-4
- E2F-5
- LCR-F1
- Sp1
Genomic Locations for KLF9 Gene
Genomic Locations for KLF9 Gene
- chr9:70,384,597-70,414,657
- (GRCh38/hg38)
- Size:
- 30,061 bases
- Orientation:
- Minus strand
- chr9:72,999,503-73,029,573
- (GRCh37/hg19)
- Size:
- 30,071 bases
- Orientation:
- Minus strand
Genomic View for KLF9 Gene
Genes around KLF9 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 9q21.12 by HGNC
- 9q21.12 by Entrez Gene
- 9q21.12 by Ensembl
KLF9 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for KLF9 Gene
Proteins for KLF9 Gene
-
Protein details for KLF9 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q13886-KLF9_HUMAN
- Recommended name:
- Krueppel-like factor 9
- Protein Accession:
- Q13886
- B2R943
- Q16196
Protein attributes for KLF9 Gene
- Size:
- 244 amino acids
- Molecular mass:
- 27235 Da
- Quaternary structure:
- No Data Available
Post-translational modifications for KLF9 Gene
Other Protein References for KLF9 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
- Novus Biologicals Antibodies for KLF9
-
Abcam antibodies for KLF9
- Invitrogen Antibodies for KLF9 (AFLGC-KLF9)
-
Boster Bio Antibodies for KLF9
-
Santa Cruz Biotechnology (SCBT) Antibodies for KLF9
Protein Products
-
OriGene Purified Proteins for KLF9
- Search Origene for MassSpec and Protein Over-expression Lysates for KLF9
- Origene Custom Protein Services for KLF9
-
Abcam proteins for KLF9
No data available for DME Specific Peptides for KLF9 Gene
Domains & Families for KLF9 Gene
Gene Families for KLF9 Gene
- HGNC:
- Human Protein Atlas (HPA):
-
- Predicted intracellular proteins
- Transcription factors
Protein Domains for KLF9 Gene
- InterPro:
- Blocks:
-
- C2H2-type zinc finger signature
- ProtoNet:
Suggested Antigen Peptide Sequences for KLF9 Gene
- GenScript: Design optimal peptide antigens:
-
- Kruppel-like factor 9 (B5BUG8_HUMAN)
- Transcription factor BTEB1 (KLF9_HUMAN)
Graphical View of Domain Structure for InterPro Entry
Q13886- Family:
-
- Belongs to the Sp1 C2H2-type zinc-finger protein family.
Function for KLF9 Gene
Molecular function for KLF9 Gene
- UniProtKB/Swiss-Prot Function:
- Transcription factor that binds to GC box promoter elements. Selectively activates mRNA synthesis from genes containing tandem repeats of GC boxes but represses genes with a single GC box. Acts as an epidermal circadian transcription factor regulating keratinocyte proliferation (PubMed:22711835).
- UniProtKB/Swiss-Prot Induction:
- Expression is highly sensitive to glucocorticoids and shows diurnal expression patterns. A strong induction of expression seen during keratinocyte differentiation in a cortisol dependent manner.
Phenotypes From GWAS Catalog for KLF9 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0000976 | transcription regulatory region sequence-specific DNA binding | IBA | 21873635 |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | ISA | -- |
| GO:0003676 | nucleic acid binding | IEA | -- |
| GO:0003677 | DNA binding | IEA | -- |
| GO:0003700 | DNA-binding transcription factor activity | TAS | 1356762 |
Phenotypes for KLF9 Gene
- MGI mutant phenotypes for KLF9:
- inferred from 2 alleles
- GenomeRNAi human phenotypes for KLF9:
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for KLF9 - Select products 50% OFF >
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-
Santa Cruz Biotechnology (SCBT) CRISPR for KLF9
miRNA for KLF9 Gene
- miRTarBase miRNAs that target KLF9
-
- hsa-miR-200c-3p (MIRT006886)
- mmu-miR-301b-3p (MIRT007867)
- mmu-miR-541-5p (MIRT008232)
- mmu-miR-17-5p (MIRT009955)
- mmu-miR-324-3p (MIRT010845)
- hsa-miR-335-5p (MIRT018674)
- hsa-miR-130b-3p (MIRT020267)
- hsa-miR-124-3p (MIRT022972)
- hsa-miR-221-3p (MIRT024152)
- hsa-miR-218-5p (MIRT024219)
- hsa-miR-93-5p (MIRT028119)
- hsa-miR-33a-5p (MIRT028240)
- hsa-miR-21-5p (MIRT031013)
- hsa-miR-155-5p (MIRT053438)
- hsa-miR-607 (MIRT445522)
- hsa-miR-511-5p (MIRT445523)
- hsa-miR-431-5p (MIRT445524)
- hsa-miR-5087 (MIRT445525)
- hsa-miR-4748 (MIRT445526)
- hsa-miR-4464 (MIRT445527)
- mmu-miR-337-3p (MIRT594364)
- mmu-miR-106b-5p (MIRT732432)
- hsa-miR-570-5p (MIRT734381)
- hsa-miR-30a-5p (MIRT734769)
- hsa-miR-140-3p (MIRT737575)
- hsa-miR-500b-3p (MIRT749473)
- hsa-miR-6750-3p (MIRT754569)
- hsa-miR-6784-3p (MIRT755772)
- hsa-miR-6862-3p (MIRT757882)
Targeted motifs for KLF9 Gene
HOMER Transcription Factor Regulatory Elements motif KLF9
- Consensus sequence: GCCACRCCCACY Submotif: canonical Cell Type: GBM GEO ID: GSE62211
miRNA Products
Inhibitory RNA Products
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Clone Products
- Applied Biological Materials (abm): Clones for KLF9 - Select products 50% OFF >
- * KLF9 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
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- Sino Biological Human cDNA Clone for KLF9
- Addgene plasmids for KLF9
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for KLF9
Cell Line Products
-
Horizon Cell Lines for KLF9
No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology and Transcription Factor Targets for KLF9 Gene
Localization for KLF9 Gene
Subcellular locations from UniProtKB/Swiss-Prot for KLF9 Gene
- Nucleus.
| Compartment | Confidence |
|---|---|
| plasma membrane | 5 |
| nucleus | 5 |
| cytosol | 5 |
| extracellular | 2 |
| cytoskeleton | 2 |
| mitochondrion | 2 |
| peroxisome | 1 |
| endoplasmic reticulum | 1 |
| endosome | 1 |
| lysosome | 1 |
| golgi apparatus | 1 |
- Nucleoplasm (3)
- Cytosol (2)
- Plasma membrane (2)
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0000790 | nuclear chromatin | ISA | -- |
| GO:0005634 | nucleus | IBA,IDA | 22711835 |
| GO:0005654 | nucleoplasm | IDA | -- |
| GO:0005829 | cytosol | IDA | -- |
| GO:0005886 | plasma membrane | IDA | -- |
Pathways & Interactions for KLF9 Gene
| SuperPathway | Contained pathways | ||
|---|---|---|---|
| 1 | Circadian rythm related genes | ||
| 2 | Diurnally Regulated Genes with Circadian Orthologs | ||
Pathways by source for KLF9 Gene
2 BioSystems pathways for KLF9 Gene
Interacting Proteins for KLF9 Gene
GPS-Prot Interaction Network for KLF9
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0006357 | regulation of transcription by RNA polymerase II | TAS | 1356762 |
| GO:0007623 | circadian rhythm | IEP | 22711835 |
| GO:0010839 | negative regulation of keratinocyte proliferation | IMP | 22711835 |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | IBA | 21873635 |
| GO:0048511 | rhythmic process | IEA | -- |
Transcripts for KLF9 Gene
mRNA/cDNA for KLF9 Gene
- 1 REFSEQ mRNAs :
- 10 NCBI additional mRNA sequence :
- 1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000377126 5175 nts (view in UCSC)
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for KLF9 - Select products 50% OFF >
- * KLF9 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
-
OriGene CRISPR knockouts for KLF9
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for KLF9
-
Santa Cruz Biotechnology (SCBT) CRISPR for KLF9
miRNA Products
Inhibitory RNA Products
- Origene shrna, sirna, and RNAi products in human, mouse, rat for KLF9
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Clone Products
- Applied Biological Materials (abm): Clones for KLF9 - Select products 50% OFF >
- * KLF9 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Sino Biological Human cDNA Clone for KLF9
- Addgene plasmids for KLF9
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for KLF9
Relevant External Links for KLF9 Gene
- GeneLoc Exon Structure for
- KLF9
Expression for KLF9 Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
-
Skeletal Muscle (Muscoskeletal System)
- Mononuclear Myocytes Hyoid Arch Muscles
- Mononuclear Myocytes Mandibular Arch Muscles
- Muscle Progenitor Cells Mandibular Arch Muscles
- Muscle Progenitor Cells Hyoid Arch Muscles
-
Epiblast (Early Embryonic Tissues)
- Epiblast Cells Epiblast
- Intraembryonic Epiblast Cells Epiblast
-
Epithelial Cells
- Mature Choroid Plexus Cells Choroid Plexus
- Adult Retinal Pigmented Epithelium Cells Retinal Pigmented Epithelium
-
Brain (Nervous System)
- Mature Choroid Plexus Cells Choroid Plexus
-
Eye (Sensory Organs)
- Adult Retinal Pigmented Epithelium Cells Retinal Pigmented Epithelium
-
Blood (Hematopoietic System)
- Hematopoietic Stem Cells Hematopoietic Bone Marrow
- Inner Cell Mass (Early Embryonic Tissues)
- Ovary (Reproductive System)
-
Adipose (Muscoskeletal System)
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for KLF9
SOURCE GeneReport for Unigene cluster for KLF9 Gene:
Hs.150557mRNA Expression by UniProt/SwissProt for KLF9 Gene:
Q13886-KLF9_HUMAN
Tissue specificity:
Epidermis (at protein level).
Evidence on tissue expression from TISSUES for KLF9 Gene
- Lung(4.7)
- Liver(4.6)
- Nervous system(3.4)
- Kidney(3.1)
- Muscle(3)
- Thyroid gland(2.8)
- Heart(2.8)
- Pancreas(2.7)
- Intestine(2.5)
- Spleen(2.4)
- Skin(2.2)
- Eye(2.2)
- Adrenal gland(2.1)
- Blood(2)
Primer Products
-
OriGene qPCR primer pairs for KLF9
Gene Expression Assay Products
No data available for mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and Phenotype-based relationships between genes and organs from Gene ORGANizer for KLF9 Gene
Orthologs for KLF9 Gene
This gene was present in the common ancestor of animals and fungi.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| Chimpanzee (Pan troglodytes) |
Mammalia | KLF9 30 31 |
|
OneToOne | |
| Dog (Canis familiaris) |
Mammalia | KLF9 31 |
|
OneToOne | |
| Cow (Bos Taurus) |
Mammalia | KLF9 30 31 |
|
OneToOne | |
| Rat (Rattus norvegicus) |
Mammalia | Klf9 30 |
|
||
| Mouse (Mus musculus) |
Mammalia | Klf9 30 17 31 |
|
OneToOne | |
| Oppossum (Monodelphis domestica) |
Mammalia | KLF9 31 |
|
OneToOne | |
| Platypus (Ornithorhynchus anatinus) |
Mammalia | KLF9 31 |
|
OneToOne | |
| Chicken (Gallus gallus) |
Aves | KLF9 30 31 |
|
OneToOne | |
| Lizard (Anolis carolinensis) |
Reptilia | KLF9 31 |
|
OneToOne | |
| Tropical Clawed Frog (Silurana tropicalis) |
Amphibia | klf9 30 |
|
||
| African clawed frog (Xenopus laevis) |
Amphibia | bteb1-A 30 |
|
||
| Zebrafish (Danio rerio) |
Actinopterygii | klf9 31 |
|
OneToOne | |
| Rainbow Trout (Oncorhynchus mykiss) |
Actinopterygii | Omy.1235 30 |
|
||
| Baker's yeast (Saccharomyces cerevisiae) |
Saccharomycetes | -- 33 |
|
|
|
| Sea Squirt (Ciona savignyi) |
Ascidiacea | CSA.7373 31 |
|
OneToMany |
- Species where no ortholog for KLF9 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Eremothecium gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- Alpha proteobacteria (Wolbachia pipientis)
- Amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- Barley (Hordeum vulgare)
- Beta proteobacteria (Neisseria meningitidis)
- Bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- Common water flea (Daphnia pulex)
- Corn (Zea mays)
- E. coli (Escherichia coli)
- Filamentous fungi (Aspergillus nidulans)
- Firmicute Bacteria (Streptococcus pneumoniae)
- Fission Yeast (Schizosaccharomyces pombe)
- Fruit Fly (Drosophila melanogaster)
- Green Algae (Chlamydomonas reinhardtii)
- Honey Bee (Apis mellifera)
- K. Lactis Yeast (Kluyveromyces lactis)
- Loblloly Pine (Pinus taeda)
- Malaria Parasite (Plasmodium falciparum)
- Medicago Trunc (Medicago Truncatula)
- Moss (Physcomitrella patens)
- Orangutan (Pongo pygmaeus)
- Pig (Sus scrofa)
- Rice (Oryza sativa)
- Rice Blast Fungus (Magnaporthe grisea)
- Schistosome Parasite (Schistosoma mansoni)
- Sea Anemone (Nematostella vectensis)
- Sea Vase (Ciona intestinalis)
- Sea Urchin (Strongylocentrotus purpuratus)
- Sorghum (Sorghum bicolor)
- Soybean (Glycine max)
- Stem Rust Fungus (Puccinia graminis)
- Sugarcane (Saccharum officinarum)
- Thale Cress (Arabidopsis thaliana)
- Tomato (Lycopersicon esculentum)
- Toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- Wheat (Triticum aestivum)
- Worm (Caenorhabditis elegans)
Evolution for KLF9 Gene
- ENSEMBL:
- Gene Tree for KLF9 (if available)
- TreeFam:
- Gene Tree for KLF9 (if available)
- Aminode:
- Evolutionary constrained regions (ECRs) for KLF9: view image
Paralogs for KLF9 Gene
Paralogs for KLF9 Gene
(32) SIMAP similar genes for KLF9 Gene using alignment to 2 proteins:
- KLF9_HUMAN
- B5BUG8_HUMAN
Variants for KLF9 Gene
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv1491500 | CNV | insertion | 17803354 |
| nsv1047862 | CNV | gain | 25217958 |
| nsv1049132 | CNV | gain | 25217958 |
| nsv428219 | CNV | loss | 18775914 |
| nsv831615 | CNV | gain | 17160897 |
Residual Variation Intolerance Score:
50.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
1.19;
23.90% of all genes are more intolerant (likely to be disease-causing)
Additional Variant Information for KLF9 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- KLF9
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for KLF9 Gene
Disorders for KLF9 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| endometrial cancer |
|
|
| otosclerosis |
|
|
Search KLF9 in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for KLF9
No data available for UniProtKB/Swiss-Prot and Genatlas for KLF9 Gene
Publications for KLF9 Gene
- Cell-specific translational control of transcription factor BTEB expression. The role of an upstream AUG in the 5'-untranslated region. (PMID: 8051167) Imataka H … Hayami M (The Journal of biological chemistry 1994) 3 4 23
- Two regulatory proteins that bind to the basic transcription element (BTE), a GC box sequence in the promoter region of the rat P-4501A1 gene. (PMID: 1356762) Imataka H … Fujii-Kuriyama Y (The EMBO journal 1992) 2 3 23
- Krüppel-like factor 9 is a circadian transcription factor in human epidermis that controls proliferation of keratinocytes. (PMID: 22711835) Spörl F … Kramer A (Proceedings of the National Academy of Sciences of the United States of America 2012) 3 4
- Kruppel-like factor 9 is a negative regulator of ligand-dependent estrogen receptor alpha signaling in Ishikawa endometrial adenocarcinoma cells. (PMID: 17717078) Velarde MC … Simmen RC (Molecular endocrinology (Baltimore, Md.) 2007) 3 23
- Progesterone receptor transactivation of the secretory leukocyte protease inhibitor gene in Ishikawa endometrial epithelial cells involves recruitment of Krüppel-like factor 9/basic transcription element binding protein-1. (PMID: 16384861) Velarde MC … Simmen RC (Endocrinology 2006) 3 23
ExternalLinks
Products for KLF9 Gene
- Custom Antibody ServicesOriGene Antibodies for KLF9
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- Browse Antibodies
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- Browse Primary Antibodies
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- antibodies-online: Show 13 available KLF9 Antibodies ranked by validation data
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- antibodies-online: Show 5 available KLF9 Proteins ranked by validation data
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- Santa Cruz Biotechnology (SCBT) Antibodies for KLF9
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- Boster Bio Antibodies for KLF9
- Browse Boster Bio ELISA Kits
Sources for KLF9 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
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