Aliases for KLF7-IT1 Gene

Subcategory (RNA class) for KLF7-IT1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for KLF7-IT1 Gene

  • KLF7 Intronic Transcript 1 2 3 5
  • KLF7 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • KLF7-IT1 2 168
  • HSALNG0021848 167
  • NONHSAG030355 92

External Ids for KLF7-IT1 Gene

Previous GeneCards Identifiers for KLF7-IT1 Gene

  • GC00U933494
  • GC02M207986

Summaries for KLF7-IT1 Gene

GeneCards Summary for KLF7-IT1 Gene

KLF7-IT1 (KLF7 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for KLF7-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for KLF7-IT1 Gene

Genomics for KLF7-IT1 Gene

GeneHancer (GH) Regulatory Elements for KLF7-IT1 Gene

Promoters and enhancers for KLF7-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J207121 Enhancer 0.8 ENCODE dbSUPER 500.7 -0.5 -540 2.4 USF1 JUND FOS REST ZNF263 FOSL2 POLR2A JUN PKNOX1 EBF1 KLF7-IT1 KLF7 MYOSLID lnc-MDH1B-8
GH02J207120 Enhancer 0.3 Ensembl dbSUPER 500.7 +1.5 1544 0.2 KLF7-IT1 MIR2355 lnc-MDH1B-8 KLF7
GH02J207526 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 20.7 -409.1 -409103 8.9 ZBTB40 ZNF217 EP300 SIN3A TCF12 NRF1 POLR2G SP1 PHF8 ZFX CREB1 ENSG00000223725 METTL21A KLF7-IT1 FASTKD2 RNU6-664P PPP1R14BP2 ENSG00000200764 PLEKHM3 KR153194-102
GH02J207762 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 11 -645.7 -645682 10 HNRNPK ZBTB40 ZNF217 CTCF SIN3A TCF12 MYC POLR2G USF1 NCOR1 FZD5 CREB1 KLF7-IT1 METTL21A PLEKHM3 MIR4775
GH02J208024 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas 11.4 -903.1 -903056 2.6 RXRA EP300 FOXK2 ZBTB40 ZNF217 SIN3A MYC TCF12 POLR2G SP1 PLEKHM3 CREB1 KLF7-IT1 FZD5 RF00026-613 RNU6-360P piR-60229-002
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around KLF7-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for KLF7-IT1 Gene

Genomic Locations for KLF7-IT1 Gene
chr2:207,120,552-207,122,045
(GRCh38/hg38)
Size:
1,494 bases
Orientation:
Minus strand
chr2:207,985,608-207,986,768
(GRCh37/hg19)
Size:
1,161 bases
Orientation:
Minus strand

Genomic View for KLF7-IT1 Gene

Genes around KLF7-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KLF7-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KLF7-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for KLF7-IT1 Gene

Proteins for KLF7-IT1 Gene

Post-translational modifications for KLF7-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KLF7-IT1 Gene

Domains & Families for KLF7-IT1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for KLF7-IT1 Gene

Function for KLF7-IT1 Gene

Phenotypes From GWAS Catalog for KLF7-IT1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KLF7-IT1 Gene

Localization for KLF7-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for KLF7-IT1 Gene

Pathways & Interactions for KLF7-IT1 Gene

PathCards logo

SuperPathways for KLF7-IT1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for KLF7-IT1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for KLF7-IT1 Gene

Drugs & Compounds for KLF7-IT1 Gene

No Compound Related Data Available

Transcripts for KLF7-IT1 Gene

mRNA/cDNA for KLF7-IT1 Gene

2 RNACentral transcripts :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
2 LncBook transcripts :
1 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for KLF7-IT1 Gene

No ASD Table

Relevant External Links for KLF7-IT1 Gene

GeneLoc Exon Structure for
KLF7-IT1

Expression for KLF7-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for KLF7-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for KLF7-IT1 Gene

This gene is overexpressed in Whole Blood (x5.7).
genes like me logo Genes that share expression patterns with KLF7-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KLF7-IT1 Gene

Orthologs for KLF7-IT1 Gene

Evolution for KLF7-IT1 Gene

ENSEMBL:
Gene Tree for KLF7-IT1 (if available)
TreeFam:
Gene Tree for KLF7-IT1 (if available)

No data available for Orthologs for KLF7-IT1 Gene

Paralogs for KLF7-IT1 Gene

No data available for Paralogs for KLF7-IT1 Gene

Variants for KLF7-IT1 Gene

Additional Variant Information for KLF7-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KLF7-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for KLF7-IT1 Gene

Disorders for KLF7-IT1 Gene

No disorders were found for KLF7-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for KLF7-IT1 Gene

Publications for KLF7-IT1 Gene

  1. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3 54

No data available for Mastermind for KLF7-IT1 Gene

Products for KLF7-IT1 Gene

Sources for KLF7-IT1 Gene