Aliases for KIRREL3-AS3 Gene

Subcategory (RNA class) for KIRREL3-AS3 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for KIRREL3-AS3 Gene

  • KIRREL3 Antisense RNA 3 2 3 5
  • KIRREL3 Antisense RNA 3 (Non-Protein Coding) 2 3
  • Proline Rich 10 2 3
  • KIRREL3-AS3 2 170
  • NCRNA00288 3 4
  • PRR10 3 4
  • Putative Uncharacterized Protein KIRREL3-AS3 4
  • KIRREL3 Antisense Gene Protein 1 4
  • Non-Protein Coding RNA 288 2
  • KIRREL3 Antisense RNA 1 4
  • Proline-Rich Protein 10 4
  • NONHSAG010003 94

External Ids for KIRREL3-AS3 Gene

Previous HGNC Symbols for KIRREL3-AS3 Gene

  • PRR10
  • NCRNA00288

Previous GeneCards Identifiers for KIRREL3-AS3 Gene

  • GC11U901880
  • GC11P126876

Summaries for KIRREL3-AS3 Gene

GeneCards Summary for KIRREL3-AS3 Gene

KIRREL3-AS3 (KIRREL3 Antisense RNA 3) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for KIRREL3-AS3 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for KIRREL3-AS3 Gene

Genomics for KIRREL3-AS3 Gene

GeneHancer (GH) Regulatory Elements for KIRREL3-AS3 Gene

Promoters and enhancers for KIRREL3-AS3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J127002 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 757.7 +0.6 590 1.4 CTCF USF2 RAD21 USF1 SIN3A POLR2A KIRREL3 KIRREL3-AS3 lnc-KIRREL3-1 lnc-ST3GAL4-8
GH11J126916 Enhancer 0.8 Ensembl ENCODE 10.2 -84.8 -84813 3 MAFK MLLT1 IKZF1 CREB1 POLR2A RFX1 IKZF2 PKNOX1 NFE2 SP1 KIRREL3-AS2 ENSG00000254938 ENSG00000255317 KIRREL3-AS3 KIRREL3 RF00998-027 LOC105369559 lnc-KIRREL3-1 AB372608
GH11J126948 Enhancer 0.7 Ensembl ENCODE dbSUPER 10.1 -53.5 -53519 1.6 FOS JUND ENSG00000255317 KIRREL3 KIRREL3-AS3 KIRREL3-AS2 MIR3167 lnc-KIRREL3-1
GH11J126977 Enhancer 0.5 Ensembl ENCODE dbSUPER 11.2 -24.5 -24510 1.6 KIRREL3-AS3 KIRREL3 MIR3167 lnc-KIRREL3-1 KIRREL3-AS2
GH11J126711 Enhancer 0.5 Ensembl 10.2 -290.8 -290834 0.6 TEAD4 CBFA2T2 FOSL1 NCOR1 TCF12 TAL1 CBFA2T3 KIRREL3 KIRREL3-AS3 lnc-ST3GAL4-5 LOC105369561 lnc-KIRREL3-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around KIRREL3-AS3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for KIRREL3-AS3 Gene

Genomic Locations for KIRREL3-AS3 Gene
chr11:127,002,910-127,006,059
(GRCh38/hg38)
Size:
3,150 bases
Orientation:
Plus strand
chr11:126,872,805-126,875,953
(GRCh37/hg19)
Size:
3,149 bases
Orientation:
Plus strand

Genomic View for KIRREL3-AS3 Gene

Genes around KIRREL3-AS3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KIRREL3-AS3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KIRREL3-AS3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KIRREL3-AS3 Gene

Proteins for KIRREL3-AS3 Gene

  • Protein details for KIRREL3-AS3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N7Y1-KIAS3_HUMAN
    Recommended name:
    Putative uncharacterized protein KIRREL3-AS3
    Protein Accession:
    Q8N7Y1
    Secondary Accessions:
    • Q14CX1

    Protein attributes for KIRREL3-AS3 Gene

    Size:
    241 amino acids
    Molecular mass:
    25772 Da
    Quaternary structure:
    No Data Available

neXtProt entry for KIRREL3-AS3 Gene

Post-translational modifications for KIRREL3-AS3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KIRREL3-AS3 Gene

Domains & Families for KIRREL3-AS3 Gene

Protein Domains for KIRREL3-AS3 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for KIRREL3-AS3 Gene

GenScript: Design optimal peptide antigens:
  • Proline-rich protein 10 (PRR10_HUMAN)
  • Proline rich 10 (Q14CW7_HUMAN)
genes like me logo Genes that share domains with KIRREL3-AS3: view

No data available for Gene Families , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for KIRREL3-AS3 Gene

Function for KIRREL3-AS3 Gene

Phenotypes From GWAS Catalog for KIRREL3-AS3 Gene

Gene Ontology (GO) - Molecular Function for KIRREL3-AS3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with KIRREL3-AS3: view

Phenotypes for KIRREL3-AS3 Gene

genes like me logo Genes that share phenotypes with KIRREL3-AS3: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for KIRREL3-AS3

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KIRREL3-AS3 Gene

Localization for KIRREL3-AS3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for KIRREL3-AS3 Gene

Pathways & Interactions for KIRREL3-AS3 Gene

PathCards logo

SuperPathways for KIRREL3-AS3 Gene

No Data Available

Interacting Proteins for KIRREL3-AS3 Gene

Selected Interacting proteins: Q8N7Y1-KIAS3_HUMAN for KIRREL3-AS3 Gene via UniProtKB IID

Symbol External ID(s) Details
PSMA3

Gene Ontology (GO) - Biological Process for KIRREL3-AS3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KIRREL3-AS3 Gene

Drugs & Compounds for KIRREL3-AS3 Gene

No Compound Related Data Available

Transcripts for KIRREL3-AS3 Gene

mRNA/cDNA for KIRREL3-AS3 Gene

(2) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(4) RNACentral transcripts :
(2) NONCODE transcripts :
(3) LNCipedia transcripts :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for KIRREL3-AS3

Alternative Splicing Database (ASD) splice patterns (SP) for KIRREL3-AS3 Gene

No ASD Table

Relevant External Links for KIRREL3-AS3 Gene

GeneLoc Exon Structure for
KIRREL3-AS3
ECgene alternative splicing isoforms for
KIRREL3-AS3

Expression for KIRREL3-AS3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for KIRREL3-AS3 Gene

SOURCE GeneReport for Unigene cluster for KIRREL3-AS3 Gene:

Hs.730461
genes like me logo Genes that share expression patterns with KIRREL3-AS3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KIRREL3-AS3 Gene

Orthologs for KIRREL3-AS3 Gene

Evolution for KIRREL3-AS3 Gene

ENSEMBL:
Gene Tree for KIRREL3-AS3 (if available)
TreeFam:
Gene Tree for KIRREL3-AS3 (if available)

No data available for Orthologs for KIRREL3-AS3 Gene

Paralogs for KIRREL3-AS3 Gene

(1) SIMAP similar genes for KIRREL3-AS3 Gene using alignment to 1 proteins:

  • KIAS3_HUMAN
genes like me logo Genes that share paralogs with KIRREL3-AS3: view

No data available for Paralogs for KIRREL3-AS3 Gene

Variants for KIRREL3-AS3 Gene

Sequence variations from dbSNP and Humsavar for KIRREL3-AS3 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000000836 -- 127,003,001(+) G/A non_coding_transcript_variant
rs1000282982 -- 127,002,753(+) G/C upstream_transcript_variant
rs1000340678 -- 127,005,830(+) A/G intron_variant
rs1001009699 -- 127,004,136(+) A/G non_coding_transcript_variant
rs1001292290 -- 127,003,912(+) C/G/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for KIRREL3-AS3 Gene

Variant ID Type Subtype PubMed ID
esv2761719 CNV gain 21179565
nsv1119424 CNV insertion 24896259
nsv1133177 CNV tandem duplication 24896259
nsv539 CNV insertion 18451855

Additional Variant Information for KIRREL3-AS3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KIRREL3-AS3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for KIRREL3-AS3 Gene

Disorders for KIRREL3-AS3 Gene

Additional Disease Information for KIRREL3-AS3

No disorders were found for KIRREL3-AS3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KIRREL3-AS3 Gene

Publications for KIRREL3-AS3 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 56
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 56
  3. Gsk3β and Tomm20 are substrates of the SCFFbxo7/PARK15 ubiquitin ligase associated with Parkinson's disease. (PMID: 27503909) Teixeira FR … Laman H (The Biochemical journal 2016) 3 56
  4. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3 56
  5. New genetic associations detected in a host response study to hepatitis B vaccine. (PMID: 20237496) Davila S … Seielstad M (Genes and immunity 2010) 3 56

Products for KIRREL3-AS3 Gene

Sources for KIRREL3-AS3 Gene