Aliases for KIRREL1-IT1 Gene

Subcategory (RNA class) for KIRREL1-IT1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for KIRREL1-IT1 Gene

  • KIRREL1 Intronic Transcript 1 2 3 5
  • KIRREL Intronic Transcript 1 (Non-Protein Coding) 2 3
  • KIRREL1-IT1 2 168
  • KIRREL Intronic Transcript 1 2
  • HSALNG0007706 167
  • NONHSAG003164 92
  • KIRREL-IT1 3

External Ids for KIRREL1-IT1 Gene

Previous HGNC Symbols for KIRREL1-IT1 Gene

  • KIRREL-IT1

Summaries for KIRREL1-IT1 Gene

GeneCards Summary for KIRREL1-IT1 Gene

KIRREL1-IT1 (KIRREL1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for KIRREL1-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for KIRREL1-IT1 Gene

Genomics for KIRREL1-IT1 Gene

GeneHancer (GH) Regulatory Elements for KIRREL1-IT1 Gene

Promoters and enhancers for KIRREL1-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J158024 Enhancer 0.6 dbSUPER 500.7 -0.1 -75 2.4 ZIC2 ZNF341 OSR2 WT1 ZBTB17 ZNF610 GLIS1 ZNF398 SMARCA4 PRDM4 KIRREL1-IT1 KIRREL1
GH01J157991 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 -18.0 -18039 32.2 EP300 CTCF ZSCAN5C NRF1 TCF12 USF1 PHF8 JUND TEAD4 FOS KIRREL1 ENSG00000237842 CD1E OR10T2 KIRREL1-IT1 HSALNG0007704
GH01J158027 Enhancer 0.8 Ensembl ENCODE dbSUPER 0.7 +3.4 3351 1.8 JUND FOS ESR1 GATA3 CEBPB TCF7L2 POLR2A FOXA1 ENSG00000229914 KIRREL1-IT1 lnc-CD5L-1 KIRREL1
GH01J158034 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 +11.8 11755 6.2 CTCF FOS ZIC2 ZNF423 EP300 ZNF341 OSR2 ZNF316 SMC3 TCF7L2 KIRREL1 ENSG00000229914 lnc-CD5L-1 KIRREL1-IT1
GH01J158043 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 +19.5 19451 4.4 USF1 TEAD4 RBM25 POLR2A NR2F2 MITF SMARCA4 CTCF MAX KLF1 lnc-CD5L-1 KIRREL1 KIRREL1-IT1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around KIRREL1-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for KIRREL1-IT1 Gene

Genomic Locations for KIRREL1-IT1 Gene
chr1:158,025,550-158,032,098
(GRCh38/hg38)
Size:
6,549 bases
Orientation:
Plus strand
chr1:157,995,340-158,001,611
(GRCh37/hg19)
Size:
6,272 bases
Orientation:
Plus strand

Genomic View for KIRREL1-IT1 Gene

Genes around KIRREL1-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KIRREL1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KIRREL1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KIRREL1-IT1 Gene

Proteins for KIRREL1-IT1 Gene

Post-translational modifications for KIRREL1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KIRREL1-IT1 Gene

Domains & Families for KIRREL1-IT1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for KIRREL1-IT1 Gene

Function for KIRREL1-IT1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KIRREL1-IT1 Gene

Localization for KIRREL1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for KIRREL1-IT1 Gene

Pathways & Interactions for KIRREL1-IT1 Gene

PathCards logo

SuperPathways for KIRREL1-IT1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for KIRREL1-IT1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for KIRREL1-IT1 Gene

Drugs & Compounds for KIRREL1-IT1 Gene

No Compound Related Data Available

Transcripts for KIRREL1-IT1 Gene

mRNA/cDNA for KIRREL1-IT1 Gene

3 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
2 LncBook transcripts :
1 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for KIRREL1-IT1 Gene

No ASD Table

Relevant External Links for KIRREL1-IT1 Gene

GeneLoc Exon Structure for
KIRREL1-IT1

Expression for KIRREL1-IT1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KIRREL1-IT1 Gene

Orthologs for KIRREL1-IT1 Gene

Evolution for KIRREL1-IT1 Gene

ENSEMBL:
Gene Tree for KIRREL1-IT1 (if available)
TreeFam:
Gene Tree for KIRREL1-IT1 (if available)

No data available for Orthologs for KIRREL1-IT1 Gene

Paralogs for KIRREL1-IT1 Gene

No data available for Paralogs for KIRREL1-IT1 Gene

Variants for KIRREL1-IT1 Gene

Additional dbSNP identifiers (rs#s) for KIRREL1-IT1 Gene

Additional Variant Information for KIRREL1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KIRREL1-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for KIRREL1-IT1 Gene

Disorders for KIRREL1-IT1 Gene

Additional Disease Information for KIRREL1-IT1

No disorders were found for KIRREL1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KIRREL1-IT1 Gene

Publications for KIRREL1-IT1 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 54

Products for KIRREL1-IT1 Gene

Sources for KIRREL1-IT1 Gene