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Aliases for KIRREL1-IT1 Gene

Subcategory (RNA class) for KIRREL1-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for KIRREL1-IT1 Gene

  • KIRREL1 Intronic Transcript 1 2 3 5
  • KIRREL Intronic Transcript 1 (Non-Protein Coding) 2 3
  • KIRREL Intronic Transcript 1 2
  • KIRREL-IT1 3

External Ids for KIRREL1-IT1 Gene

Previous HGNC Symbols for KIRREL1-IT1 Gene

  • KIRREL-IT1

Summaries for KIRREL1-IT1 Gene

GeneCards Summary for KIRREL1-IT1 Gene

KIRREL1-IT1 (KIRREL1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for KIRREL1-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KIRREL1-IT1 Gene

Genomics for KIRREL1-IT1 Gene

GeneHancer (GH) Regulatory Elements for KIRREL1-IT1 Gene

Promoters and enhancers for KIRREL1-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I158024 Enhancer 0.6 Ensembl dbSUPER 550.8 -0.4 -449 1 PRDM4 PRDM1 SP7 KIRREL1-IT1 KIRREL1
GH01I157991 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.4 -18.0 -18039 32.2 GLI4 ZNF2 ETS1 ZNF121 GLIS2 ZNF213 ZNF143 FOS RUNX3 MCM3 KIRREL1 LOC246784 CD1E OR10T2 KIRREL1-IT1
GH01I158028 Enhancer 0.7 ENCODE dbSUPER 0.8 +3.7 3705 1 JUND GATA3 POLR2A CEBPB FOS RPS10P8 KIRREL1-IT1 KIRREL1 LOC105371460
GH01I158034 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +12.0 12018 5.7 CTCF ZNF140 MZF1 ZIC2 RAD21 ZNF316 ZBTB48 ZNF143 SMC3 RCOR1 KIRREL1 RPS10P8 KIRREL1-IT1 LOC105371460
GH01I158027 Enhancer 0.4 dbSUPER 0.8 +2.6 2591 0.6 CEBPB ZKSCAN1 RPS10P8 KIRREL1-IT1 KIRREL1 LOC105371460
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around KIRREL1-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for KIRREL1-IT1 Gene

Genomic Locations for KIRREL1-IT1 Gene
chr1:158,025,550-158,031,166
(GRCh38/hg38)
Size:
5,617 bases
Orientation:
Plus strand
chr1:157,995,340-158,001,611
(GRCh37/hg19)

Genomic View for KIRREL1-IT1 Gene

Genes around KIRREL1-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KIRREL1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KIRREL1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for KIRREL1-IT1 Gene

Proteins for KIRREL1-IT1 Gene

Post-translational modifications for KIRREL1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KIRREL1-IT1 Gene

Domains & Families for KIRREL1-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KIRREL1-IT1 Gene

Function for KIRREL1-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KIRREL1-IT1 Gene

Localization for KIRREL1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for KIRREL1-IT1 Gene

Pathways & Interactions for KIRREL1-IT1 Gene

SuperPathways for KIRREL1-IT1 Gene

No Data Available

Interacting Proteins for KIRREL1-IT1 Gene

Gene Ontology (GO) - Biological Process for KIRREL1-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KIRREL1-IT1 Gene

Drugs & Compounds for KIRREL1-IT1 Gene

No Compound Related Data Available

Transcripts for KIRREL1-IT1 Gene

mRNA/cDNA for KIRREL1-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for KIRREL1-IT1 Gene

No ASD Table

Relevant External Links for KIRREL1-IT1 Gene

GeneLoc Exon Structure for
KIRREL1-IT1
ECgene alternative splicing isoforms for
KIRREL1-IT1

Expression for KIRREL1-IT1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KIRREL1-IT1 Gene

Orthologs for KIRREL1-IT1 Gene

Evolution for KIRREL1-IT1 Gene

ENSEMBL:
Gene Tree for KIRREL1-IT1 (if available)
TreeFam:
Gene Tree for KIRREL1-IT1 (if available)

No data available for Orthologs for KIRREL1-IT1 Gene

Paralogs for KIRREL1-IT1 Gene

No data available for Paralogs for KIRREL1-IT1 Gene

Variants for KIRREL1-IT1 Gene

Additional Variant Information for KIRREL1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KIRREL1-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for KIRREL1-IT1 Gene

Disorders for KIRREL1-IT1 Gene

Additional Disease Information for KIRREL1-IT1

No disorders were found for KIRREL1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KIRREL1-IT1 Gene

Publications for KIRREL1-IT1 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58

Products for KIRREL1-IT1 Gene

Sources for KIRREL1-IT1 Gene

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