Aliases for KIAA1656 Gene

Subcategory (RNA class) for KIAA1656 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for KIAA1656 Gene

  • KIAA1656 Protein 3
  • NONHSAG033670.2 91
  • HSALNG0134888 164
  • Lnc-RNF215-1 165

External Ids for KIAA1656 Gene

Previous GeneCards Identifiers for KIAA1656 Gene

  • GC22M027460
  • GC22M029089
  • GC22U900120
  • GC22M030764

Summaries for KIAA1656 Gene

GeneCards Summary for KIAA1656 Gene

KIAA1656 (KIAA1656 Protein) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for KIAA1656 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for KIAA1656 Gene

Genomics for KIAA1656 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for KIAA1656 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J030385 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 0.4 -9.1 -9092 2.1 CTCF BACH1 MTA2 ZNF143 ZIC2 PATZ1 REST RAD21 TRIM22 POLR2A RF00017-3800 RNF215 CASTOR1 ENSG00000249590 TBC1D10A ENSG00000248751 OSM CCDC157 SF3A1 LIF
GH22J030372 Enhancer 0.5 Ensembl 0.7 +4.8 4804 2.2 ZNF600 POLR2A SPI1 REST GLIS1 GLIS2 RNF215 CASTOR1 CCDC157 KIAA1656 piR-38580-195 SF3A1 SEC14L2
GH22J030374 Enhancer 0.4 Ensembl 0.7 +3.2 3204 0.2 PRDM10 REST USF1 RNF215 KIAA1656 piR-38580-195 SF3A1 CCDC157 SEC14L2
GH22J030362 Enhancer 0.6 Ensembl ENCODE 0.4 +14.9 14904 1.2 POLR2A TAL1 TCF12 ZFP37 CBFA2T2 CBFA2T3 piR-38580-195 CCDC157 SF3A1 KIAA1656 SEC14L2
GH22J030370 Enhancer 0.3 Ensembl 0.4 +6.8 6804 1 NRF1 POLR2A RNF215 KIAA1656 piR-38580-195 SF3A1 CCDC157 SEC14L2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around KIAA1656 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for KIAA1656 Gene

Genomic Locations for KIAA1656 Gene
chr22:30,368,811-30,377,905
(GRCh38/hg38)
Size:
9,095 bases
Orientation:
Minus strand
chr22:30,764,800-30,773,863
(GRCh37/hg19)
Size:
9,064 bases
Orientation:
Minus strand

Genomic View for KIAA1656 Gene

Genes around KIAA1656 on UCSC Golden Path with GeneCards custom track
KIAA1656 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
KIAA1656 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KIAA1656 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KIAA1656 Gene

Proteins for KIAA1656 Gene

Post-translational modifications for KIAA1656 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KIAA1656 Gene

Domains & Families for KIAA1656 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for KIAA1656 Gene

Function for KIAA1656 Gene

Phenotypes From GWAS Catalog for KIAA1656 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KIAA1656 Gene

Localization for KIAA1656 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for KIAA1656 Gene

Pathways & Interactions for KIAA1656 Gene

PathCards logo

SuperPathways for KIAA1656 Gene

No Data Available

Gene Ontology (GO) - Biological Process for KIAA1656 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for KIAA1656 Gene

Drugs & Compounds for KIAA1656 Gene

No Compound Related Data Available

Transcripts for KIAA1656 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for KIAA1656 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075CAAA_9606 lncRNA 7605 3

RefSeq: NR_046312,

LNCipedia: lnc-RNF215-1:2,

NONCODE: NONHSAT084775.2,

URS00009B18EB_9606 lncRNA 1443 2

LncBook: HSALNT0276892,

NONCODE: NONHSAT192804.1,

URS000027C797_9606 lncRNA 1443 1

LNCipedia: lnc-RNF215-1:1,

KIAA1656 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for KIAA1656 Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for KIAA1656 Gene

No ASD Table

Relevant External Links for KIAA1656 Gene

GeneLoc Exon Structure for
KIAA1656

Expression for KIAA1656 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for KIAA1656 Gene

mRNA differential expression in normal tissues according to GTEx for KIAA1656 Gene

This gene is overexpressed in Testis (x4.4).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for KIAA1656

SOURCE GeneReport for Unigene cluster for KIAA1656 Gene:

Hs.614837
genes like me logo Genes that share expression patterns with KIAA1656: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KIAA1656 Gene

Orthologs for KIAA1656 Gene

No data available for Orthologs and Evolution for KIAA1656 Gene

Paralogs for KIAA1656 Gene

No data available for Paralogs for KIAA1656 Gene

Variants for KIAA1656 Gene

Additional dbSNP identifiers (rs#s) for KIAA1656 Gene

Structural Variations from Database of Genomic Variants (DGV) for KIAA1656 Gene

Variant ID Type Subtype PubMed ID
nsv1066179 CNV gain 25217958
nsv1110864 OTHER inversion 24896259
nsv829171 CNV loss 20364138
nsv953067 CNV deletion 24416366

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for KIAA1656 Gene

Disorders for KIAA1656 Gene

No disorders were found for KIAA1656 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for KIAA1656 Gene

Publications for KIAA1656 Gene

  1. A genome annotation-driven approach to cloning the human ORFeome. (PMID: 15461802) Collins JE … Dunham I (Genome biology 2004) 3
  2. Identification of novel transcribed sequences on human chromosome 22 by expressed sequence tag mapping. (PMID: 11258795) Hirosawa M … Ohara O (DNA research : an international journal for rapid publication of reports on genes and genomes 2001) 3

No data available for Mastermind for KIAA1656 Gene

Products for KIAA1656 Gene

Sources for KIAA1656 Gene