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Aliases for KIAA0319 Gene

Aliases for KIAA0319 Gene

  • KIAA0319 2 3
  • Neuronal Migration 2 3
  • Dyslexia-Associated Protein KIAA0319 3
  • Dyslexia Susceptibility 2 3
  • AAV Receptor 3
  • DYLX2 3
  • AAVR 3
  • DYX2 3
  • NMIG 3

External Ids for KIAA0319 Gene

Previous GeneCards Identifiers for KIAA0319 Gene

  • GC06M024601
  • GC06M024652
  • GC06M024655
  • GC06M024493

Summaries for KIAA0319 Gene

Entrez Gene Summary for KIAA0319 Gene

  • This gene encodes a transmembrane protein that contains a large extracellular domain with multiple polycystic kidney disease (PKD) domains. The encoded protein may play a role in the development of the cerebral cortex by regulating neuronal migration and cell adhesion. Single nucleotide polymorphisms in this gene are associated with dyslexia. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Nov 2011]

GeneCards Summary for KIAA0319 Gene

KIAA0319 (KIAA0319) is a Protein Coding gene. Diseases associated with KIAA0319 include Dyslexia 2 and Dyslexia. Among its related pathways are Clathrin-mediated endocytosis and Vesicle-mediated transport. Gene Ontology (GO) annotations related to this gene include calcium ion binding. An important paralog of this gene is KIAA0319L.

UniProtKB/Swiss-Prot for KIAA0319 Gene

  • Involved in neuronal migration during development of the cerebral neocortex. May function in a cell autonomous and a non-cell autonomous manner and play a role in appropriate adhesion between migrating neurons and radial glial fibers. May also regulate growth and differentiation of dendrites.

Gene Wiki entry for KIAA0319 Gene

Additional gene information for KIAA0319 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KIAA0319 Gene

Genomics for KIAA0319 Gene

GeneHancer (GH) Regulatory Elements for KIAA0319 Gene

Promoters and enhancers for KIAA0319 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J024645 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 666.6 0.0 -17 1.9 HDGF ATF1 ZNF133 ARID4B SIN3A FEZF1 ZNF2 ZNF48 GLIS2 FOS KIAA0319 ACOT13 TDP2 C6orf62 KRT8P43
GH06J024657 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 12.9 -17.6 -17581 11.6 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC MEF2D SSRP1 ZNF610 TDP2 ACOT13 C6orf62 KIAA0319 NUP50P2 ENSG00000272402 ENSG00000282804
GH06J024583 Enhancer 1.2 Ensembl ENCODE 16.2 +61.9 61894 2 PKNOX1 ARNT FEZF1 ZNF2 YY1 ZNF121 ZNF213 ZNF143 ZNF207 KLF7 PIR39702 PIR60469 ACOT13 KIAA0319 ENSG00000223623 SPTLC1P2 TDP2 ALDH5A1 GPLD1
GH06J024742 Enhancer 1.4 FANTOM5 Ensembl ENCODE 10.4 -97.4 -97374 2.6 HDAC1 PKNOX1 ARNT SIN3A BATF IRF4 YY1 ZNF335 ZNF766 SCRT2 LOC105374978 C6orf62 GMNN KIAA0319 TDP2 KRT8P43 LOC100289381
GH06J024689 Enhancer 0.8 dbSUPER 17.2 -46.7 -46690 6.3 FOXA2 ZNF133 YBX1 FEZF1 ZNF2 RAD21 YY1 ZNF121 ARID2 EGR1 TDP2 KIAA0319 C6orf62 ACOT13 ALDH5A1 GPLD1 ENSG00000272345
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around KIAA0319 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the KIAA0319 gene promoter:

Genomic Locations for KIAA0319 Gene

Genomic Locations for KIAA0319 Gene
chr6:24,544,104-24,646,172
(GRCh38/hg38)
Size:
102,069 bases
Orientation:
Minus strand
chr6:24,544,332-24,646,383
(GRCh37/hg19)

Genomic View for KIAA0319 Gene

Genes around KIAA0319 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KIAA0319 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KIAA0319 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KIAA0319 Gene

Proteins for KIAA0319 Gene

  • Protein details for KIAA0319 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5VV43-K0319_HUMAN
    Recommended name:
    Dyslexia-associated protein KIAA0319
    Protein Accession:
    Q5VV43
    Secondary Accessions:
    • A7MD37
    • B2RTU7
    • B4DHA7
    • B4DK75
    • B7ZML3
    • F5H123
    • Q9UJC8
    • Q9Y4G7

    Protein attributes for KIAA0319 Gene

    Size:
    1072 amino acids
    Molecular mass:
    117763 Da
    Quaternary structure:
    • Homodimer. Interacts with AP2M1; required for clathrin-mediated endocytosis.
    SequenceCaution:
    • Sequence=BAA20777.2; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for KIAA0319 Gene

    Alternative splice isoforms for KIAA0319 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for KIAA0319 Gene

Post-translational modifications for KIAA0319 Gene

  • N-glycosylated.
  • O-glycosylated.
  • Shedding of the extracellular domain and intramembrane cleavage produce several proteolytic products. The intramembrane cleavage releases a soluble cytoplasmic polypeptide that translocates to the nucleolus.
  • Glycosylation at isoforms=2, 3, 4733, Asn551, Asn536, isoforms=2, 3, 4513, isoforms=2, 3, 4498, Asn421, isoforms=2, 3, 4394, Asn262, Asn219, and isoforms=2, 3, 4196
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for KIAA0319 Gene

Domains & Families for KIAA0319 Gene

Gene Families for KIAA0319 Gene

Human Protein Atlas (HPA):
  • Disease related genes
  • Predicted membrane proteins
  • Predicted secreted proteins

Suggested Antigen Peptide Sequences for KIAA0319 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with KIAA0319: view

No data available for UniProtKB/Swiss-Prot for KIAA0319 Gene

Function for KIAA0319 Gene

Molecular function for KIAA0319 Gene

UniProtKB/Swiss-Prot Function:
Involved in neuronal migration during development of the cerebral neocortex. May function in a cell autonomous and a non-cell autonomous manner and play a role in appropriate adhesion between migrating neurons and radial glial fibers. May also regulate growth and differentiation of dendrites.
GENATLAS Biochemistry:
cDNA sequence,expressed in brain,>100kDa,related to C elegans twitchin

Phenotypes From GWAS Catalog for KIAA0319 Gene

Gene Ontology (GO) - Molecular Function for KIAA0319 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 19419997
genes like me logo Genes that share ontologies with KIAA0319: view
genes like me logo Genes that share phenotypes with KIAA0319: view

Animal Models for KIAA0319 Gene

MGI Knock Outs for KIAA0319:

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for KIAA0319

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for KIAA0319 Gene

Localization for KIAA0319 Gene

Subcellular locations from UniProtKB/Swiss-Prot for KIAA0319 Gene

Cell membrane; Single-pass type I membrane protein. Early endosome membrane; Single-pass type I membrane protein. Note=Low-abundance isoforms lacking the transmembrane domain have been described; these are secreted. {ECO:0000269 PubMed:18063668}.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for KIAA0319 gene
Compartment Confidence
plasma membrane 5
endosome 5
extracellular 2
peroxisome 1
nucleus 1
endoplasmic reticulum 1
lysosome 1

Subcellular locations from the

Human Protein Atlas (HPA)

Gene Ontology (GO) - Cellular Components for KIAA0319 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005768 endosome IEA --
GO:0005769 early endosome IDA 19419997
GO:0005886 plasma membrane TAS --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with KIAA0319: view

Pathways & Interactions for KIAA0319 Gene

genes like me logo Genes that share pathways with KIAA0319: view

Interacting Proteins for KIAA0319 Gene

Gene Ontology (GO) - Biological Process for KIAA0319 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001764 neuron migration IGI 19679544
GO:0007275 multicellular organism development IEA --
GO:0007399 nervous system development IEA --
GO:0061024 membrane organization TAS --
GO:2000171 negative regulation of dendrite development IGI 19679544
genes like me logo Genes that share ontologies with KIAA0319: view

No data available for SIGNOR curated interactions for KIAA0319 Gene

Drugs & Compounds for KIAA0319 Gene

No Compound Related Data Available

Transcripts for KIAA0319 Gene

Unigene Clusters for KIAA0319 Gene

KIAA0319:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for KIAA0319

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for KIAA0319 Gene

ExUns: 1 ^ 2a · 2b · 2c ^ 3 ^ 4a · 4b · 4c · 4d ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18 ^ 19 ^ 20 ^ 21
SP1: -
SP2: - - -
SP3:
SP4: -

Relevant External Links for KIAA0319 Gene

GeneLoc Exon Structure for
KIAA0319
ECgene alternative splicing isoforms for
KIAA0319

Expression for KIAA0319 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for KIAA0319 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for KIAA0319 Gene

This gene is overexpressed in Brain - Frontal Cortex (BA9) (x5.5), Brain - Anterior cingulate cortex (BA24) (x5.2), Brain - Cortex (x4.6), Brain - Cerebellar Hemisphere (x4.3), and Brain - Nucleus accumbens (basal ganglia) (x4.1).

Protein differential expression in normal tissues from HIPED for KIAA0319 Gene

This gene is overexpressed in Pancreatic juice (68.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for KIAA0319 Gene



Protein tissue co-expression partners for KIAA0319 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of KIAA0319 Gene:

KIAA0319

SOURCE GeneReport for Unigene cluster for KIAA0319 Gene:

Hs.26441

mRNA Expression by UniProt/SwissProt for KIAA0319 Gene:

Q5VV43-K0319_HUMAN
Tissue specificity: Detected in adult brain cortex and fetal frontal lobe (at protein level). Highly expressed in brain cortex, putamen, amygdala, hippocampus and cerebellum.

Evidence on tissue expression from TISSUES for KIAA0319 Gene

  • Nervous system(4.7)
genes like me logo Genes that share expression patterns with KIAA0319: view

No data available for Phenotype-based relationships between genes and organs from Gene ORGANizer for KIAA0319 Gene

Orthologs for KIAA0319 Gene

This gene was present in the common ancestor of animals.

Orthologs for KIAA0319 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia KIAA0319 34 33
  • 99.35 (n)
OneToOne
cow
(Bos Taurus)
Mammalia KIAA0319 34 33
  • 86.42 (n)
OneToOne
dog
(Canis familiaris)
Mammalia KIAA0319 34 33
  • 81.47 (n)
OneToOne
mouse
(Mus musculus)
Mammalia D130043K22Rik 16 34 33
  • 81.16 (n)
rat
(Rattus norvegicus)
Mammalia RGD1307443 33
  • 80.79 (n)
oppossum
(Monodelphis domestica)
Mammalia KIAA0319 34
  • 65 (a)
OneToOne
chicken
(Gallus gallus)
Aves KIAA0319 34 33
  • 70.24 (n)
OneToOne
lizard
(Anolis carolinensis)
Reptilia KIAA0319 34
  • 61 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia kiaa0319 33
  • 61 (n)
zebrafish
(Danio rerio)
Actinopterygii LOC794624 33
  • 55.1 (n)
KIAA0319 34
  • 43 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG7565 34 35 33
  • 49.05 (n)
OneToMany
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP008639 33
  • 46.88 (n)
sea squirt
(Ciona savignyi)
Ascidiacea -- 34
  • 48 (a)
OneToMany
Species where no ortholog for KIAA0319 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for KIAA0319 Gene

ENSEMBL:
Gene Tree for KIAA0319 (if available)
TreeFam:
Gene Tree for KIAA0319 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for KIAA0319: view image

Paralogs for KIAA0319 Gene

Paralogs for KIAA0319 Gene

(1) SIMAP similar genes for KIAA0319 Gene using alignment to 2 proteins:

  • K0319_HUMAN
  • L8E9P4_HUMAN
genes like me logo Genes that share paralogs with KIAA0319: view

Variants for KIAA0319 Gene

Sequence variations from dbSNP and Humsavar for KIAA0319 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000051148 -- 24,620,350(-) A/C genic_upstream_transcript_variant, intron_variant
rs1000056499 -- 24,568,107(-) T/C intron_variant
rs1000061878 -- 24,577,291(-) C/ intron_variant
rs1000196054 -- 24,633,820(-) T/G genic_upstream_transcript_variant, intron_variant
rs1000196396 -- 24,558,174(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for KIAA0319 Gene

Variant ID Type Subtype PubMed ID
esv2731713 CNV deletion 23290073
esv2731714 CNV deletion 23290073
esv34020 CNV loss 18971310
nsv601164 CNV gain 21841781
nsv601165 CNV loss 21841781
nsv981110 CNV duplication 23825009

Variation tolerance for KIAA0319 Gene

Residual Variation Intolerance Score: 78.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 7.70; 83.02% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for KIAA0319 Gene

Human Gene Mutation Database (HGMD)
KIAA0319
SNPedia medical, phenotypic, and genealogical associations of SNPs for
KIAA0319

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for KIAA0319 Gene

Disorders for KIAA0319 Gene

MalaCards: The human disease database

(6) MalaCards diseases for KIAA0319 Gene - From: HGMD, GTR, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
dyslexia 2
  • dyslexia, susceptibility to, 2
dyslexia
reading disorder
  • dyslexia
specific developmental disorder
speech and communication disorders
  • communication disorder
- elite association - COSMIC cancer census association via MalaCards

UniProtKB/Swiss-Prot

K0319_HUMAN
  • Dyslexia 2 (DYX2) [MIM:600202]: A relatively common, complex cognitive disorder characterized by an impairment of reading performance despite adequate motivational, educational and intellectual opportunities. It is a multifactorial trait, with evidence for familial clustering and heritability. {ECO:0000269 PubMed:16600991}. Note=Disease susceptibility is associated with variations affecting the gene represented in this entry.

Additional Disease Information for KIAA0319

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
genes like me logo Genes that share disorders with KIAA0319: view

No data available for Genatlas for KIAA0319 Gene

Publications for KIAA0319 Gene

  1. Investigation of interaction between DCDC2 and KIAA0319 in a large German dyslexia sample. (PMID: 18810304) Ludwig KU … Hoffmann P (Journal of neural transmission (Vienna, Austria : 1996) 2008) 3 22 44 58
  2. Further evidence that the KIAA0319 gene confers susceptibility to developmental dyslexia. (PMID: 17033633) Harold D … Monaco AP (Molecular psychiatry 2006) 3 22 44 58
  3. Strong evidence that KIAA0319 on chromosome 6p is a susceptibility gene for developmental dyslexia. (PMID: 15717286) Cope N … Williams J (American journal of human genetics 2005) 3 4 44 58
  4. Knockout Mice for Dyslexia Susceptibility Gene Homologs KIAA0319 and KIAA0319L have Unaffected Neuronal Migration but Display Abnormal Auditory Processing. (PMID: 29045729) Guidi LG … Molnár Z (Cerebral cortex (New York, N.Y. : 1991) 2017) 2 3 58
  5. The Dyslexia-susceptibility Protein KIAA0319 Inhibits Axon Growth Through Smad2 Signaling. (PMID: 28334068) Franquinho F … Sousa MM (Cerebral cortex (New York, N.Y. : 1991) 2017) 2 3 58

Products for KIAA0319 Gene

Sources for KIAA0319 Gene

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