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Aliases for KDM5C-IT1 Gene

Subcategory (RNA class) for KDM5C-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for KDM5C-IT1 Gene

  • KDM5C Intronic Transcript 1 2 3 5
  • KDM5C Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for KDM5C-IT1 Gene

Previous GeneCards Identifiers for KDM5C-IT1 Gene

  • GC00U933046

Summaries for KDM5C-IT1 Gene

GeneCards Summary for KDM5C-IT1 Gene

KDM5C-IT1 (KDM5C Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for KDM5C-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KDM5C-IT1 Gene

Genomics for KDM5C-IT1 Gene

GeneHancer (GH) Regulatory Elements for KDM5C-IT1 Gene

Promoters and enhancers for KDM5C-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XI053420 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 24.4 -207.7 -207651 2.8 HDGF PKNOX1 SMAD1 ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B ZNF213 SMC1A RIBC1 KDM5C FAM156B TSPYL2 GPR173 ACTG1P10 KDM5C-IT1 PHF8 ENSG00000233250
GH0XI053080 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 15.7 +132.4 132431 3.4 PKNOX1 ATF1 ARNT ZNF133 ARID4B SIN3A GLI4 BRCA1 POLR2B GLIS2 TSPYL2 GPR173 FAM156B KDM5C-IT1 KDM5C PHF8 KANTR ACTG1P10 SMC1A ENSG00000233250
GH0XI054042 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 13.2 -829.7 -829670 3.9 PKNOX1 CLOCK FOXA2 ARNT NEUROD1 SIN3A FEZF1 DMAP1 ZNF2 YY1 PHF8 KDM5C ACTG1P10 SMC1A KANTR ENSG00000233250 TSPYL2 APEX2 GPR173 MAGED2
GH0XI052994 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 11.5 +219.3 219305 2.6 PKNOX1 ATF1 ARNT ARID4B SIN3A FEZF1 BRCA1 YY1 ZNF213 ZNF207 FAM156A SMC1A KDM5C FAM156B ENSG00000233250 ACTG1P10 KDM5C-IT1 HUWE1 GC0XP052962
GH0XI053093 Promoter/Enhancer 1.5 Ensembl ENCODE 15.7 +120.5 120539 2.1 PKNOX1 ATF1 ARID4B SIN3A DMAP1 YY1 GTF3C2 GLIS2 ZNF213 ELK1 ENSG00000234019 KANTR FAM156B KDM5C-IT1 KDM5C PHF8 ACTG1P10 SMC1A TSPYL2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around KDM5C-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for KDM5C-IT1 Gene

Genomic Locations for KDM5C-IT1 Gene
chrX:53,212,408-53,214,679
(GRCh38/hg38)
Size:
2,272 bases
Orientation:
Minus strand
chrX:53,241,590-53,243,861
(GRCh37/hg19)

Genomic View for KDM5C-IT1 Gene

Genes around KDM5C-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KDM5C-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KDM5C-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for KDM5C-IT1 Gene

Proteins for KDM5C-IT1 Gene

Post-translational modifications for KDM5C-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KDM5C-IT1 Gene

Domains & Families for KDM5C-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KDM5C-IT1 Gene

Function for KDM5C-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KDM5C-IT1 Gene

Localization for KDM5C-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for KDM5C-IT1 Gene

Pathways & Interactions for KDM5C-IT1 Gene

SuperPathways for KDM5C-IT1 Gene

No Data Available

Interacting Proteins for KDM5C-IT1 Gene

Gene Ontology (GO) - Biological Process for KDM5C-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KDM5C-IT1 Gene

Drugs & Compounds for KDM5C-IT1 Gene

No Compound Related Data Available

Transcripts for KDM5C-IT1 Gene

mRNA/cDNA for KDM5C-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for KDM5C-IT1 Gene

No ASD Table

Relevant External Links for KDM5C-IT1 Gene

GeneLoc Exon Structure for
KDM5C-IT1
ECgene alternative splicing isoforms for
KDM5C-IT1

Expression for KDM5C-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for KDM5C-IT1 Gene

genes like me logo Genes that share expression patterns with KDM5C-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KDM5C-IT1 Gene

Orthologs for KDM5C-IT1 Gene

Evolution for KDM5C-IT1 Gene

ENSEMBL:
Gene Tree for KDM5C-IT1 (if available)
TreeFam:
Gene Tree for KDM5C-IT1 (if available)

No data available for Orthologs for KDM5C-IT1 Gene

Paralogs for KDM5C-IT1 Gene

No data available for Paralogs for KDM5C-IT1 Gene

Variants for KDM5C-IT1 Gene

Additional Variant Information for KDM5C-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KDM5C-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for KDM5C-IT1 Gene

Disorders for KDM5C-IT1 Gene

No disorders were found for KDM5C-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for KDM5C-IT1 Gene

Publications for KDM5C-IT1 Gene

No publications were found for KDM5C-IT1 Gene.

Products for KDM5C-IT1 Gene

Sources for KDM5C-IT1 Gene

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