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Aliases for KDM4A-AS1 Gene

Subcategory (RNA class) for KDM4A-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for KDM4A-AS1 Gene

  • KDM4A Antisense RNA 1 2 3 5
  • KDM4A Antisense RNA 1 (Non-Protein Coding) 2

External Ids for KDM4A-AS1 Gene

Previous GeneCards Identifiers for KDM4A-AS1 Gene

  • GC01M044167

Summaries for KDM4A-AS1 Gene

GeneCards Summary for KDM4A-AS1 Gene

KDM4A-AS1 (KDM4A Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for KDM4A-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KDM4A-AS1 Gene

Genomics for KDM4A-AS1 Gene

GeneHancer (GH) Regulatory Elements for KDM4A-AS1 Gene

Promoters and enhancers for KDM4A-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I043705 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 562.1 +0.5 543 3.8 HDGF FOXA2 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 KDM4A-AS1 ST3GAL3 SZT2 DMAP1 P3H1 KDM4A HYI MED8 ARTN ZNF691
GH01I044212 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE 40.8 -505.3 -505344 2.3 MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF416 ZNF143 DMAP1 SZT2 HYI KDM4A-AS1 ARTN LOC101929609 RPS8 HECTD3 PTCH2 KDM4A
GH01I042949 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.1 +751.3 751323 15.6 FEZF1 YY1 E2F8 ZNF143 SP3 NFYC MEF2D ZNF585B GLIS1 RCOR2 SLC2A1 SLC2A1-AS1 SZT2 ARTN PPIH P3H1 MED8 RNU6-880P ERMAP LOC101929609
GH01I043529 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11 +174.4 174398 9.2 HDGF PKNOX1 CLOCK SMAD1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF213 PTPRF ST3GAL3 KDM4A-AS1 ARTN IPO13 LOC101929609 HYI MED8 GC01M043545
GH01I042764 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 12.4 +941.7 941687 4 HDGF PKNOX1 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 SLC30A9 POLR2B P3H1 C1orf50 ENSG00000283580 SVBP PPIH SZT2 KDM4A-AS1 MED8 ZNF691 GC01M042747
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around KDM4A-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for KDM4A-AS1 Gene

Genomic Locations for KDM4A-AS1 Gene
chr1:43,699,724-43,708,138
(GRCh38/hg38)
Size:
8,415 bases
Orientation:
Minus strand
chr1:44,165,395-44,173,809
(GRCh37/hg19)

Genomic View for KDM4A-AS1 Gene

Genes around KDM4A-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KDM4A-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KDM4A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KDM4A-AS1 Gene

Proteins for KDM4A-AS1 Gene

Post-translational modifications for KDM4A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KDM4A-AS1 Gene

Domains & Families for KDM4A-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KDM4A-AS1 Gene

Function for KDM4A-AS1 Gene

Phenotypes From GWAS Catalog for KDM4A-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KDM4A-AS1 Gene

Localization for KDM4A-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for KDM4A-AS1 Gene

Pathways & Interactions for KDM4A-AS1 Gene

SuperPathways for KDM4A-AS1 Gene

No Data Available

Interacting Proteins for KDM4A-AS1 Gene

Gene Ontology (GO) - Biological Process for KDM4A-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KDM4A-AS1 Gene

Drugs & Compounds for KDM4A-AS1 Gene

No Compound Related Data Available

Transcripts for KDM4A-AS1 Gene

mRNA/cDNA for KDM4A-AS1 Gene

(3) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for KDM4A-AS1 Gene

KDM4A antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for KDM4A-AS1 Gene

No ASD Table

Relevant External Links for KDM4A-AS1 Gene

GeneLoc Exon Structure for
KDM4A-AS1
ECgene alternative splicing isoforms for
KDM4A-AS1

Expression for KDM4A-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for KDM4A-AS1 Gene

SOURCE GeneReport for Unigene cluster for KDM4A-AS1 Gene:

Hs.655569
genes like me logo Genes that share expression patterns with KDM4A-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KDM4A-AS1 Gene

Orthologs for KDM4A-AS1 Gene

Evolution for KDM4A-AS1 Gene

ENSEMBL:
Gene Tree for KDM4A-AS1 (if available)
TreeFam:
Gene Tree for KDM4A-AS1 (if available)

No data available for Orthologs for KDM4A-AS1 Gene

Paralogs for KDM4A-AS1 Gene

No data available for Paralogs for KDM4A-AS1 Gene

Variants for KDM4A-AS1 Gene

Sequence variations from dbSNP and Humsavar for KDM4A-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000082462 -- 43,699,794(-) A/C non_coding_transcript_variant
rs1000259340 -- 43,700,240(-) G/C non_coding_transcript_variant
rs1000610144 -- 43,700,459(-) T/C non_coding_transcript_variant
rs1000635831 -- 43,709,002(-) A/G upstream_transcript_variant
rs1000657287 -- 43,705,223(-) G/A/C intron_variant

Additional Variant Information for KDM4A-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KDM4A-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for KDM4A-AS1 Gene

Disorders for KDM4A-AS1 Gene

Additional Disease Information for KDM4A-AS1

No disorders were found for KDM4A-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KDM4A-AS1 Gene

Publications for KDM4A-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for KDM4A-AS1 Gene

Sources for KDM4A-AS1 Gene

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