Aliases for KDM2B-DT Gene

Subcategory (RNA class) for KDM2B-DT Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for KDM2B-DT Gene

  • KDM2B Divergent Transcript 2 3

External Ids for KDM2B-DT Gene

Summaries for KDM2B-DT Gene

GeneCards Summary for KDM2B-DT Gene

KDM2B-DT (KDM2B Divergent Transcript) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for KDM2B-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for KDM2B-DT Gene

Genomics for KDM2B-DT Gene

GeneHancer (GH) Regulatory Elements for KDM2B-DT Gene

Promoters and enhancers for KDM2B-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J121575 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 750.6 -1.4 -1436 8.9 ZNF24 ZBTB40 SMARCE1 POLR2A NR2F6 CREB1 ZNF362 RELA HLF DACH1 KDM2B ENSG00000256742 KDM2B-DT CABP1 ENSG00000256008 B3GNT4 LINC01089 MORN3 RNF34 ORAI1
GH12J121589 Enhancer 1.5 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 0.4 +10.1 10132 3.9 ZBTB40 SP1 NR2F6 FOS CREB1 ZNF362 NFYC ZNF121 MNT ZNF652 SETD1B RSRC2 ZCCHC8 KNTC1 CABP1 ENSG00000256008 KDM2B B3GNT4 ANAPC5 PSMD9
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around KDM2B-DT on UCSC Golden Path with GeneCards custom track

Genomic Locations for KDM2B-DT Gene

Genomic Locations for KDM2B-DT Gene
chr12:121,581,176-121,596,000
(GRCh38/hg38)
Size:
14,825 bases
Orientation:
Plus strand

Genomic View for KDM2B-DT Gene

Genes around KDM2B-DT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KDM2B-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KDM2B-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KDM2B-DT Gene

Proteins for KDM2B-DT Gene

Post-translational modifications for KDM2B-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for KDM2B-DT Gene

Domains & Families for KDM2B-DT Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for KDM2B-DT Gene

Function for KDM2B-DT Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KDM2B-DT Gene

Localization for KDM2B-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for KDM2B-DT Gene

Pathways & Interactions for KDM2B-DT Gene

PathCards logo

SuperPathways for KDM2B-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for KDM2B-DT Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KDM2B-DT Gene

Drugs & Compounds for KDM2B-DT Gene

No Compound Related Data Available

Transcripts for KDM2B-DT Gene

Alternative Splicing Database (ASD) splice patterns (SP) for KDM2B-DT Gene

No ASD Table

Relevant External Links for KDM2B-DT Gene

GeneLoc Exon Structure for
KDM2B-DT
ECgene alternative splicing isoforms for
KDM2B-DT

No data available for mRNA/cDNA for KDM2B-DT Gene

Expression for KDM2B-DT Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KDM2B-DT Gene

Orthologs for KDM2B-DT Gene

No data available for Orthologs and Evolution for KDM2B-DT Gene

Paralogs for KDM2B-DT Gene

No data available for Paralogs for KDM2B-DT Gene

Variants for KDM2B-DT Gene

Sequence variations from dbSNP and Humsavar for KDM2B-DT Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs376781406 uncertain-significance, not specified 121,580,866(+) G/A upstream_transcript_variant
rs1000171238 -- 121,580,206(+) A/T upstream_transcript_variant
rs1000223877 -- 121,595,350(+) G/C intron_variant
rs1000271611 -- 121,587,270(+) A/G genic_upstream_transcript_variant, intron_variant
rs1000324274 -- 121,586,936(+) C/A genic_upstream_transcript_variant, intron_variant

Additional Variant Information for KDM2B-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KDM2B-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for KDM2B-DT Gene

Disorders for KDM2B-DT Gene

No disorders were found for KDM2B-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for KDM2B-DT Gene

Publications for KDM2B-DT Gene

No publications were found for KDM2B-DT Gene.

No data available for External Links for KDM2B-DT Gene

Products for KDM2B-DT Gene

Sources for KDM2B-DT Gene