Aliases for KCTD21-AS1 Gene

Subcategory (RNA class) for KCTD21-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for KCTD21-AS1 Gene

  • KCTD21 Antisense RNA 1 2 3 5
  • KCTD21-AS1 2 168
  • HSALNG0085965 167
  • NONHSAG009180 92
  • HSALNG0085975 167
  • HSALNG0085969 167
  • NONHSAG009177 92
  • NONHSAG009179 92
  • NONHSAG009178 92
  • Lnc-USP35-11 168

External Ids for KCTD21-AS1 Gene

Previous GeneCards Identifiers for KCTD21-AS1 Gene

  • GC11P077854

Summaries for KCTD21-AS1 Gene

GeneCards Summary for KCTD21-AS1 Gene

KCTD21-AS1 (KCTD21 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for KCTD21-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for KCTD21-AS1 Gene

Genomics for KCTD21-AS1 Gene

GeneHancer (GH) Regulatory Elements for KCTD21-AS1 Gene

Promoters and enhancers for KCTD21-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around KCTD21-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for KCTD21-AS1 Gene

Genomic Locations for KCTD21-AS1 Gene
chr11:78,139,739-78,236,194
(GRCh38/hg38)
Size:
96,456 bases
Orientation:
Plus strand
chr11:77,850,817-77,886,582
(GRCh37/hg19)
Size:
35,766 bases
Orientation:
Plus strand

Genomic View for KCTD21-AS1 Gene

Genes around KCTD21-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KCTD21-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KCTD21-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KCTD21-AS1 Gene

Proteins for KCTD21-AS1 Gene

Post-translational modifications for KCTD21-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KCTD21-AS1 Gene

Domains & Families for KCTD21-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for KCTD21-AS1 Gene

Function for KCTD21-AS1 Gene

Phenotypes From GWAS Catalog for KCTD21-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KCTD21-AS1 Gene

Localization for KCTD21-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for KCTD21-AS1 Gene

Pathways & Interactions for KCTD21-AS1 Gene

PathCards logo

SuperPathways for KCTD21-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for KCTD21-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for KCTD21-AS1 Gene

Drugs & Compounds for KCTD21-AS1 Gene

No Compound Related Data Available

Transcripts for KCTD21-AS1 Gene

mRNA/cDNA for KCTD21-AS1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for KCTD21-AS1 Gene

No ASD Table

Relevant External Links for KCTD21-AS1 Gene

GeneLoc Exon Structure for
KCTD21-AS1

Expression for KCTD21-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for KCTD21-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for KCTD21-AS1

genes like me logo Genes that share expression patterns with KCTD21-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KCTD21-AS1 Gene

Orthologs for KCTD21-AS1 Gene

Evolution for KCTD21-AS1 Gene

ENSEMBL:
Gene Tree for KCTD21-AS1 (if available)
TreeFam:
Gene Tree for KCTD21-AS1 (if available)

No data available for Orthologs for KCTD21-AS1 Gene

Paralogs for KCTD21-AS1 Gene

No data available for Paralogs for KCTD21-AS1 Gene

Variants for KCTD21-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for KCTD21-AS1 Gene

SNP ID Clinical significance and condition Chr 11 pos Variation AA Info Type
778440 Benign: not provided 78,173,865(+) G/A NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT

Additional dbSNP identifiers (rs#s) for KCTD21-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for KCTD21-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1047928 CNV gain 25217958
nsv516503 CNV loss 19592680
nsv520740 CNV gain 19592680
nsv527066 CNV gain 19592680

Additional Variant Information for KCTD21-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KCTD21-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for KCTD21-AS1 Gene

Disorders for KCTD21-AS1 Gene

Additional Disease Information for KCTD21-AS1

No disorders were found for KCTD21-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KCTD21-AS1 Gene

Publications for KCTD21-AS1 Gene

  1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose JE … Uhl GR (Molecular medicine (Cambridge, Mass.) 2010) 3 54
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for KCTD21-AS1 Gene

Sources for KCTD21-AS1 Gene