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Aliases for KCTD21-AS1 Gene

Subcategory (RNA class) for KCTD21-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for KCTD21-AS1 Gene

  • KCTD21 Antisense RNA 1 2 3 5

External Ids for KCTD21-AS1 Gene

Previous GeneCards Identifiers for KCTD21-AS1 Gene

  • GC11P077854

Summaries for KCTD21-AS1 Gene

GeneCards Summary for KCTD21-AS1 Gene

KCTD21-AS1 (KCTD21 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for KCTD21-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KCTD21-AS1 Gene

Genomics for KCTD21-AS1 Gene

GeneHancer (GH) Regulatory Elements for KCTD21-AS1 Gene

Promoters and enhancers for KCTD21-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I078138 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 625.6 0.0 -5 2.6 MLX ZFP64 ARID4B SIN3A DMAP1 ZBTB7B YY1 SLC30A9 POLR2B E2F8 KCTD21-AS1 ALG8 INTS4 KCTD21 ENSG00000255449 LOC101928865 RPL21P95 USP35 THRSP
GH11I078044 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 45.9 -94.2 -94215 2.7 HDGF SMAD1 ATF1 ARID4B SIN3A ZNF2 ZNF48 SLC30A9 E2F8 ARID2 KCTD14 KCTD21-AS1 INTS4 NDUFC2 ALG8 AAMDC ENSG00000254675 NDUFC2-KCTD14
GH11I078185 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 25.7 +48.1 48105 5.4 MLX DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 ZFP41 ZNF610 USP35 KCTD21 RPL21P95 INTS4 LOC101928865 ENSG00000255449 KCTD21-AS1 ALG8 RSF1 PIR40351
GH11I078021 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE 36.3 -116.9 -116868 2.2 FOXA2 ARID4B DMAP1 ZNF48 ZSCAN9 RAD21 YY1 ETS1 SLC30A9 KLF11 ENSG00000254675 KCTD14 KCTD21-AS1 ENSG00000254829 NDUFC2-KCTD14
GH11I078077 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 30.5 -59.8 -59806 4.2 MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF143 SP3 NDUFC2 NDUFC2-KCTD14 LOC105369401 KCTD21-AS1 INTS4 RPL21P95 LOC101928865 RSF1 THRSP
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around KCTD21-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for KCTD21-AS1 Gene

Genomic Locations for KCTD21-AS1 Gene
chr11:78,139,771-78,175,323
(GRCh38/hg38)
Size:
35,553 bases
Orientation:
Plus strand
chr11:77,850,817-77,886,582
(GRCh37/hg19)

Genomic View for KCTD21-AS1 Gene

Genes around KCTD21-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KCTD21-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KCTD21-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KCTD21-AS1 Gene

Proteins for KCTD21-AS1 Gene

Post-translational modifications for KCTD21-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KCTD21-AS1 Gene

Domains & Families for KCTD21-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KCTD21-AS1 Gene

Function for KCTD21-AS1 Gene

Phenotypes From GWAS Catalog for KCTD21-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KCTD21-AS1 Gene

Localization for KCTD21-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for KCTD21-AS1 Gene

Pathways & Interactions for KCTD21-AS1 Gene

SuperPathways for KCTD21-AS1 Gene

No Data Available

Interacting Proteins for KCTD21-AS1 Gene

Gene Ontology (GO) - Biological Process for KCTD21-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KCTD21-AS1 Gene

Drugs & Compounds for KCTD21-AS1 Gene

No Compound Related Data Available

Transcripts for KCTD21-AS1 Gene

mRNA/cDNA for KCTD21-AS1 Gene

(1) REFSEQ mRNAs :
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for KCTD21-AS1 Gene

No ASD Table

Relevant External Links for KCTD21-AS1 Gene

GeneLoc Exon Structure for
KCTD21-AS1
ECgene alternative splicing isoforms for
KCTD21-AS1

Expression for KCTD21-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for KCTD21-AS1 Gene

genes like me logo Genes that share expression patterns with KCTD21-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KCTD21-AS1 Gene

Orthologs for KCTD21-AS1 Gene

Evolution for KCTD21-AS1 Gene

ENSEMBL:
Gene Tree for KCTD21-AS1 (if available)
TreeFam:
Gene Tree for KCTD21-AS1 (if available)

No data available for Orthologs for KCTD21-AS1 Gene

Paralogs for KCTD21-AS1 Gene

No data available for Paralogs for KCTD21-AS1 Gene

Variants for KCTD21-AS1 Gene

Sequence variations from dbSNP and Humsavar for KCTD21-AS1 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs538716086 uncertain-significance, Congenital disorder of glycosylation 78,139,557(+) C/G upstream_transcript_variant
rs542407081 uncertain-significance, Congenital disorder of glycosylation 78,139,595(+) G/A upstream_transcript_variant
rs886048689 uncertain-significance, Congenital disorder of glycosylation 78,139,593(+) G/A upstream_transcript_variant
rs10793289 benign, not specified 78,139,471(+) C/A upstream_transcript_variant
rs1000071259 -- 78,170,620(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for KCTD21-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv527066 CNV gain 19592680
nsv520740 CNV gain 19592680
nsv516503 CNV loss 19592680
nsv1047928 CNV gain 25217958

Additional Variant Information for KCTD21-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KCTD21-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for KCTD21-AS1 Gene

Disorders for KCTD21-AS1 Gene

Additional Disease Information for KCTD21-AS1

No disorders were found for KCTD21-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KCTD21-AS1 Gene

Publications for KCTD21-AS1 Gene

  1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose JE … Uhl GR (Molecular medicine (Cambridge, Mass.) 2010) 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for KCTD21-AS1 Gene

Sources for KCTD21-AS1 Gene

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