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Aliases for KCNQ5-IT1 Gene

Subcategory (RNA class) for KCNQ5-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for KCNQ5-IT1 Gene

  • KCNQ5 Intronic Transcript 1 2 3 5
  • KCNQ5 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for KCNQ5-IT1 Gene

Previous GeneCards Identifiers for KCNQ5-IT1 Gene

  • GC00U933843
  • GC06P073342

Summaries for KCNQ5-IT1 Gene

GeneCards Summary for KCNQ5-IT1 Gene

KCNQ5-IT1 (KCNQ5 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for KCNQ5-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KCNQ5-IT1 Gene

Genomics for KCNQ5-IT1 Gene

GeneHancer (GH) Regulatory Elements for KCNQ5-IT1 Gene

Promoters and enhancers for KCNQ5-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I072619 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE 0.4 -8.6 -8647 4.6 HDGF PKNOX1 SIN3A FEZF1 GLIS2 ZNF213 ZNF207 ZNF143 ATF7 RUNX3 KCNQ5 MTO1 EIF3EP1 ENSG00000229852 KCNQ5-IT1
GH06I072648 Enhancer 0.9 Ensembl ENCODE 0.4 +19.6 19624 2.5 SMAD1 EBF1 BATF IRF4 RELA POLR2A ATF7 PRDM10 NFE2 IKZF2 KCNQ5 KCNQ5-IT1 GC06P072687
GH06I072646 Enhancer 0.3 ENCODE 0.4 +16.3 16333 0.2 ZBTB40 KCNQ5 KCNQ5-IT1 GC06P072687
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around KCNQ5-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for KCNQ5-IT1 Gene

Genomic Locations for KCNQ5-IT1 Gene
48,064 bases
Plus strand

Genomic View for KCNQ5-IT1 Gene

Genes around KCNQ5-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KCNQ5-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KCNQ5-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KCNQ5-IT1 Gene

Proteins for KCNQ5-IT1 Gene

Post-translational modifications for KCNQ5-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KCNQ5-IT1 Gene

Domains & Families for KCNQ5-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KCNQ5-IT1 Gene

Function for KCNQ5-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KCNQ5-IT1 Gene

Localization for KCNQ5-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for KCNQ5-IT1 Gene

Pathways & Interactions for KCNQ5-IT1 Gene

SuperPathways for KCNQ5-IT1 Gene

No Data Available

Interacting Proteins for KCNQ5-IT1 Gene

Gene Ontology (GO) - Biological Process for KCNQ5-IT1 Gene


No data available for Pathways by source and SIGNOR curated interactions for KCNQ5-IT1 Gene

Drugs & Compounds for KCNQ5-IT1 Gene

No Compound Related Data Available

Transcripts for KCNQ5-IT1 Gene

mRNA/cDNA for KCNQ5-IT1 Gene

(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for KCNQ5-IT1 Gene

KCNQ5 intronic transcript 1 (non-protein coding):
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for KCNQ5-IT1 Gene

No ASD Table

Relevant External Links for KCNQ5-IT1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for KCNQ5-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for KCNQ5-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for KCNQ5-IT1 Gene

This gene is overexpressed in Testis (x31.2).

SOURCE GeneReport for Unigene cluster for KCNQ5-IT1 Gene:

genes like me logo Genes that share expression patterns with KCNQ5-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KCNQ5-IT1 Gene

Orthologs for KCNQ5-IT1 Gene

Evolution for KCNQ5-IT1 Gene

Gene Tree for KCNQ5-IT1 (if available)
Gene Tree for KCNQ5-IT1 (if available)

No data available for Orthologs for KCNQ5-IT1 Gene

Paralogs for KCNQ5-IT1 Gene

No data available for Paralogs for KCNQ5-IT1 Gene

Variants for KCNQ5-IT1 Gene

Sequence variations from dbSNP and Humsavar for KCNQ5-IT1 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000007224 -- 72,648,539(+) G/A intron_variant
rs1000051423 -- 72,659,089(+) T/C intron_variant
rs1000290458 -- 72,641,835(+) G/A intron_variant
rs1000299131 -- 72,652,694(+) A/T intron_variant
rs1000329614 -- 72,628,570(+) A/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for KCNQ5-IT1 Gene

Variant ID Type Subtype PubMed ID
dgv1130e199 CNV deletion 23128226
dgv86n68 CNV gain 17160897
esv3353350 CNV duplication 20981092
esv3609491 CNV loss 21293372
nsv463152 CNV loss 19166990
nsv603692 CNV loss 21841781
nsv823730 CNV loss 20364138

Additional Variant Information for KCNQ5-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for KCNQ5-IT1 Gene

Disorders for KCNQ5-IT1 Gene

Additional Disease Information for KCNQ5-IT1

No disorders were found for KCNQ5-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KCNQ5-IT1 Gene

Publications for KCNQ5-IT1 Gene

No publications were found for KCNQ5-IT1 Gene.

Products for KCNQ5-IT1 Gene

Sources for KCNQ5-IT1 Gene

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