Aliases for KCNQ1-AS1 Gene

Subcategory (RNA class) for KCNQ1-AS1 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for KCNQ1-AS1 Gene

  • KCNQ1 Antisense RNA 1 2 3 5
  • KCNQ1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • KCNQ1-AS1 2 170
  • HSALNG0082241 169
  • NONHSAG007434 94

External Ids for KCNQ1-AS1 Gene

Previous GeneCards Identifiers for KCNQ1-AS1 Gene

  • GC00U933107

Summaries for KCNQ1-AS1 Gene

GeneCards Summary for KCNQ1-AS1 Gene

KCNQ1-AS1 (KCNQ1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with KCNQ1-AS1 include Atrial Fibrillation, Familial, 3 and Short Qt Syndrome 2.

Additional gene information for KCNQ1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for KCNQ1-AS1 Gene

Genomics for KCNQ1-AS1 Gene

GeneHancer (GH) Regulatory Elements for KCNQ1-AS1 Gene

Promoters and enhancers for KCNQ1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J002859 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas 750.6 +1.2 1241 3.9 RBPJ NR2F1 NR2F6 L3MBTL2 POU5F1 ELF3 PPARG IKZF1 PKNOX1 CEBPA KCNQ1-AS1 SLC22A18 lnc-SLC22A18-3
GH11J002863 Enhancer 0.3 ENCODE 750.6 -1.0 -975 0.2 EZH2 KCNQ1-AS1 KCNQ1DN
GH11J002777 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.8 +82.5 82533 5.3 CTCF SMARCE1 RUNX1 CC2D1A L3MBTL2 RAD21 TEAD4 ZKSCAN8 ZNF148 GTF2F1 KCNQ1-AS1 KCNQ1DN LSP1 KCNQ1 CDKN1C COX6CP18 lnc-SLC22A18-5 lnc-SLC22A18-3 AJ006345
GH11J002824 Enhancer 1.4 VISTA FANTOM5 ENCODE CraniofacialAtlas dbSUPER 12.2 +36.2 36162 3.4 POLR2A MYC HLF L3MBTL2 MAX ZIC2 CEBPA SMARCC1 CEBPB CHD2 lnc-SLC22A18-3 KCNQ1-AS1 KCNQ1DN CDKN1C lnc-SLC22A18-5 COX6CP18 AJ006345 KCNQ1
GH11J002834 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas 12.9 +24.3 24298 7 CTCF NR2F6 L3MBTL2 ZNF148 SP5 ZIC2 REST ATF1 PKNOX1 MNT KCNQ1-AS1 KCNQ1DN SLC22A18 TSSC2 lnc-SLC22A18-3 AJ006345 KCNQ1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around KCNQ1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for KCNQ1-AS1 Gene

Genomic Locations for KCNQ1-AS1 Gene
chr11:2,840,135-2,862,191
(GRCh38/hg38)
Size:
22,057 bases
Orientation:
Minus strand
chr11:2,861,365-2,882,798
(GRCh37/hg19)
Size:
21,434 bases
Orientation:
Minus strand

Genomic View for KCNQ1-AS1 Gene

Genes around KCNQ1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KCNQ1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KCNQ1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KCNQ1-AS1 Gene

Proteins for KCNQ1-AS1 Gene

Post-translational modifications for KCNQ1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KCNQ1-AS1 Gene

Domains & Families for KCNQ1-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for KCNQ1-AS1 Gene

Function for KCNQ1-AS1 Gene

Phenotypes From GWAS Catalog for KCNQ1-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KCNQ1-AS1 Gene

Localization for KCNQ1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for KCNQ1-AS1 Gene

Pathways & Interactions for KCNQ1-AS1 Gene

PathCards logo

SuperPathways for KCNQ1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for KCNQ1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KCNQ1-AS1 Gene

Drugs & Compounds for KCNQ1-AS1 Gene

No Compound Related Data Available

Transcripts for KCNQ1-AS1 Gene

mRNA/cDNA for KCNQ1-AS1 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(4) RNACentral transcripts :
(4) LncBook transcripts :
(3) LNCipedia transcripts :
(3) NONCODE transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for KCNQ1-AS1 Gene

No ASD Table

Relevant External Links for KCNQ1-AS1 Gene

GeneLoc Exon Structure for
KCNQ1-AS1
ECgene alternative splicing isoforms for
KCNQ1-AS1

Expression for KCNQ1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for KCNQ1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for KCNQ1-AS1 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x9.9), Testis (x8.3), and Ovary (x5.5).

SOURCE GeneReport for Unigene cluster for KCNQ1-AS1 Gene:

Hs.639425
genes like me logo Genes that share expression patterns with KCNQ1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KCNQ1-AS1 Gene

Orthologs for KCNQ1-AS1 Gene

Evolution for KCNQ1-AS1 Gene

ENSEMBL:
Gene Tree for KCNQ1-AS1 (if available)
TreeFam:
Gene Tree for KCNQ1-AS1 (if available)

No data available for Orthologs for KCNQ1-AS1 Gene

Paralogs for KCNQ1-AS1 Gene

No data available for Paralogs for KCNQ1-AS1 Gene

Variants for KCNQ1-AS1 Gene

Sequence variations from dbSNP and Humsavar for KCNQ1-AS1 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs10798 benign, Romano-Ward syndrome, Long QT syndrome, Familial atrial fibrillation, short QT syndrome, Jervell and Lange-Nielsen syndrome 2,848,935(-) A/G intron_variant
rs112113213 likely-benign, uncertain-significance, Long QT syndrome, Cardiovascular phenotype, Familial atrial fibrillation, Jervell and Lange-Nielsen syndrome, not provided, short QT syndrome, Romano-Ward syndrome 2,847,847(-) C/G/T intron_variant
rs113029000 likely-benign, Romano-Ward syndrome, short QT syndrome, Familial atrial fibrillation, Long QT syndrome, Jervell and Lange-Nielsen syndrome 2,848,269(-) G/A/C intron_variant
rs114844136 likely-benign, short QT syndrome, Jervell and Lange-Nielsen syndrome, Long QT syndrome, Familial atrial fibrillation, Romano-Ward syndrome 2,848,745(-) G/A intron_variant
rs114877430 likely-benign, Jervell and Lange-Nielsen syndrome, Long QT syndrome, short QT syndrome, Familial atrial fibrillation, Romano-Ward syndrome 2,848,353(-) G/A/T intron_variant

Additional Variant Information for KCNQ1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KCNQ1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for KCNQ1-AS1 Gene

Disorders for KCNQ1-AS1 Gene

MalaCards: The human disease database

(6) MalaCards diseases for KCNQ1-AS1 Gene - From: GeneCards

Disorder Aliases PubMed IDs
atrial fibrillation, familial, 3
  • atfb3
short qt syndrome 2
  • sqt2
jervell and lange-nielsen syndrome 1
  • jlns1
long qt syndrome 1
  • lqt1
familial atrial fibrillation
  • atrial fibrillation, familial, 1
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for KCNQ1-AS1

genes like me logo Genes that share disorders with KCNQ1-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for KCNQ1-AS1 Gene

Publications for KCNQ1-AS1 Gene

No publications were found for KCNQ1-AS1 Gene.

Products for KCNQ1-AS1 Gene

Sources for KCNQ1-AS1 Gene