Aliases for KCNQ1-AS1 Gene

Subcategory (RNA class) for KCNQ1-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for KCNQ1-AS1 Gene

  • KCNQ1 Antisense RNA 1 2 3 5
  • KCNQ1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • KCNQ1-AS1 2 168
  • HSALNG0082241 167
  • NONHSAG007434 92

External Ids for KCNQ1-AS1 Gene

Previous GeneCards Identifiers for KCNQ1-AS1 Gene

  • GC00U933107

Summaries for KCNQ1-AS1 Gene

GeneCards Summary for KCNQ1-AS1 Gene

KCNQ1-AS1 (KCNQ1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with KCNQ1-AS1 include Atrial Fibrillation, Familial, 3 and Short Qt Syndrome 2.

Additional gene information for KCNQ1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for KCNQ1-AS1 Gene

Genomics for KCNQ1-AS1 Gene

GeneHancer (GH) Regulatory Elements for KCNQ1-AS1 Gene

Promoters and enhancers for KCNQ1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J002859 Enhancer 1.2 Ensembl ENCODE CraniofacialAtlas 500.7 +1.2 1241 3.9 FOS TCF7 ZBTB7A EZH2 TCF12 CREB1 SAP130 FOSL2 MEF2B POLR2A KCNQ1-AS1 SLC22A18 lnc-SLC22A18-3
GH11J002863 Enhancer 0.4 ENCODE 500.7 -1.0 -975 0.2 EZH2 TAF1 SUZ12 KCNQ1-AS1 KCNQ1DN
GH11J002777 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.8 +82.5 82533 5.3 PHB2 ZIC2 ZBTB11 CTCF RFX1 REST HES1 MYC RUNX1 CTBP1 KCNQ1-AS1 KCNQ1DN KCNQ1 CDKN1C COX6CP18 lnc-SLC22A18-5 lnc-SLC22A18-3 AJ006345
GH11J002824 Enhancer 1.4 VISTA FANTOM5 ENCODE CraniofacialAtlas dbSUPER 12.2 +36.2 36162 3.4 FOS ZIC2 POLR2A EP300 SMARCC1 NR3C1 CTCF CEBPB CHD2 JUN lnc-SLC22A18-3 KCNQ1-AS1 KCNQ1DN CDKN1C lnc-SLC22A18-5 COX6CP18 AJ006345 KCNQ1
GH11J002834 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas 13 +24.3 24298 7 CTCF ZIC2 KDM6A REST ZBTB25 SKI MXI1 PCBP1 CREB1 ZKSCAN1 KCNQ1-AS1 KCNQ1DN SLC22A18 TSSC2 lnc-SLC22A18-3 AJ006345 KCNQ1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around KCNQ1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for KCNQ1-AS1 Gene

Genomic Locations for KCNQ1-AS1 Gene
chr11:2,840,135-2,862,191
(GRCh38/hg38)
Size:
22,057 bases
Orientation:
Minus strand
chr11:2,861,365-2,882,798
(GRCh37/hg19)
Size:
21,434 bases
Orientation:
Minus strand

Genomic View for KCNQ1-AS1 Gene

Genes around KCNQ1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KCNQ1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KCNQ1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KCNQ1-AS1 Gene

Proteins for KCNQ1-AS1 Gene

Post-translational modifications for KCNQ1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KCNQ1-AS1 Gene

Domains & Families for KCNQ1-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for KCNQ1-AS1 Gene

Function for KCNQ1-AS1 Gene

Phenotypes From GWAS Catalog for KCNQ1-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KCNQ1-AS1 Gene

Localization for KCNQ1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for KCNQ1-AS1 Gene

Pathways & Interactions for KCNQ1-AS1 Gene

PathCards logo

SuperPathways for KCNQ1-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for KCNQ1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for KCNQ1-AS1 Gene

Drugs & Compounds for KCNQ1-AS1 Gene

No Compound Related Data Available

Transcripts for KCNQ1-AS1 Gene

mRNA/cDNA for KCNQ1-AS1 Gene

4 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
4 LncBook transcripts :
3 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for KCNQ1-AS1 Gene

No ASD Table

Relevant External Links for KCNQ1-AS1 Gene

GeneLoc Exon Structure for
KCNQ1-AS1

Expression for KCNQ1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for KCNQ1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for KCNQ1-AS1 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x9.9), Testis (x8.3), and Ovary (x5.5).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for KCNQ1-AS1

SOURCE GeneReport for Unigene cluster for KCNQ1-AS1 Gene:

Hs.639425
genes like me logo Genes that share expression patterns with KCNQ1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KCNQ1-AS1 Gene

Orthologs for KCNQ1-AS1 Gene

Evolution for KCNQ1-AS1 Gene

ENSEMBL:
Gene Tree for KCNQ1-AS1 (if available)
TreeFam:
Gene Tree for KCNQ1-AS1 (if available)

No data available for Orthologs for KCNQ1-AS1 Gene

Paralogs for KCNQ1-AS1 Gene

No data available for Paralogs for KCNQ1-AS1 Gene

Variants for KCNQ1-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for KCNQ1-AS1 Gene

SNP ID Clinical significance and condition Chr 11 pos Variation AA Info Type
668962 Likely Benign: not provided 2,847,910(-) C/T SYNONYMOUS_VARIANT
671899 Benign: not provided 2,847,648(-) T/C INTRON_VARIANT
680963 Benign: not provided 2,847,469(-) A/G INTRON_VARIANT
rs10798 Benign: Long QT syndrome; Jervell and Lange-Nielsen syndrome; Romano-Ward syndrome; short QT syndrome; Familial atrial fibrillation 2,848,935(-) A/G THREE_PRIME_UTR_VARIANT
rs112113213 Conflicting Interpretations: Long QT syndrome; Jervell and Lange-Nielsen syndrome; Romano-Ward syndrome; short QT syndrome; Familial atrial fibrillation; Cardiovascular phenotype; not provided 2,847,847(-) C/T SYNONYMOUS_VARIANT

Additional dbSNP identifiers (rs#s) for KCNQ1-AS1 Gene

Additional Variant Information for KCNQ1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KCNQ1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for KCNQ1-AS1 Gene

Disorders for KCNQ1-AS1 Gene

MalaCards: The human disease database

(9) MalaCards diseases for KCNQ1-AS1 Gene - From: DISEASES and GeneCards

- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for KCNQ1-AS1

genes like me logo Genes that share disorders with KCNQ1-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for KCNQ1-AS1 Gene

Publications for KCNQ1-AS1 Gene

No publications were found for KCNQ1-AS1 Gene.

Products for KCNQ1-AS1 Gene

Sources for KCNQ1-AS1 Gene