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Aliases for KCNMA1-AS3 Gene

Subcategory (RNA class) for KCNMA1-AS3 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for KCNMA1-AS3 Gene

  • KCNMA1 Antisense RNA 3 2 3 5

External Ids for KCNMA1-AS3 Gene

Summaries for KCNMA1-AS3 Gene

GeneCards Summary for KCNMA1-AS3 Gene

KCNMA1-AS3 (KCNMA1 Antisense RNA 3) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for KCNMA1-AS3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KCNMA1-AS3 Gene

Genomics for KCNMA1-AS3 Gene

GeneHancer (GH) Regulatory Elements for KCNMA1-AS3 Gene

Promoters and enhancers for KCNMA1-AS3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J077349 Enhancer 1.3 Ensembl ENCODE dbSUPER 600.7 0.0 -35 3.2 ZSCAN21 MAFK SP7 ZNF174 EGR1 SMARCA4 FOSL2 CREB1 GLIS2 POLR2A KCNMA1-AS3 KCNMA1 ENSG00000228748 ENSG00000224500
GH10J077162 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 10.5 -186.5 -186535 4.5 CTCF NCOA3 MAFK RAD21 FOSL2 CREB1 POLR2A PKNOX1 NFE2L2 REST POLR3A KCNMA1 KCNMA1-AS3 KCNMA1-AS2 GC10P077253
GH10J077390 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 10.8 +41.7 41655 4.6 CTCF RAD21 IKZF1 POLR2A IKZF2 ZNF512 ZNF143 REST TRIM22 SP1 KCNMA1 KCNMA1-AS3 LOC105378369
GH10J077179 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 10.2 -171.2 -171197 1.3 SP1 POLR2A FOSL2 GATA3 JUND ZNF143 ZNF398 ZMYM3 ZBTB33 KCNMA1 KCNMA1-AS3 KCNMA1-AS2 GC10P077253
GH10J077287 Enhancer 1.1 Ensembl ENCODE 10.9 -63.7 -63671 2.8 ZNF121 ZSCAN21 MAFK SP7 SP1 MZF1 ZNF547 POLR2A ZNF331 PKNOX1 ENSG00000224500 KCNMA1-AS3 GC10P077253 KCNMA1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around KCNMA1-AS3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for KCNMA1-AS3 Gene

Genomic Locations for KCNMA1-AS3 Gene
chr10:77,350,872-77,376,613
(GRCh38/hg38)
Size:
25,742 bases
Orientation:
Plus strand

Genomic View for KCNMA1-AS3 Gene

Genes around KCNMA1-AS3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KCNMA1-AS3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KCNMA1-AS3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KCNMA1-AS3 Gene

Proteins for KCNMA1-AS3 Gene

Post-translational modifications for KCNMA1-AS3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KCNMA1-AS3 Gene

Domains & Families for KCNMA1-AS3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KCNMA1-AS3 Gene

Function for KCNMA1-AS3 Gene

Phenotypes From GWAS Catalog for KCNMA1-AS3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KCNMA1-AS3 Gene

Localization for KCNMA1-AS3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for KCNMA1-AS3 Gene

Pathways & Interactions for KCNMA1-AS3 Gene

PathCards logo

SuperPathways for KCNMA1-AS3 Gene

No Data Available

Interacting Proteins for KCNMA1-AS3 Gene

Gene Ontology (GO) - Biological Process for KCNMA1-AS3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KCNMA1-AS3 Gene

Drugs & Compounds for KCNMA1-AS3 Gene

No Compound Related Data Available

Transcripts for KCNMA1-AS3 Gene

mRNA/cDNA for KCNMA1-AS3 Gene

(4) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for KCNMA1-AS3 Gene

No ASD Table

Relevant External Links for KCNMA1-AS3 Gene

GeneLoc Exon Structure for
KCNMA1-AS3
ECgene alternative splicing isoforms for
KCNMA1-AS3

Expression for KCNMA1-AS3 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KCNMA1-AS3 Gene

Orthologs for KCNMA1-AS3 Gene

Evolution for KCNMA1-AS3 Gene

ENSEMBL:
Gene Tree for KCNMA1-AS3 (if available)
TreeFam:
Gene Tree for KCNMA1-AS3 (if available)

No data available for Orthologs for KCNMA1-AS3 Gene

Paralogs for KCNMA1-AS3 Gene

No data available for Paralogs for KCNMA1-AS3 Gene

Variants for KCNMA1-AS3 Gene

Sequence variations from dbSNP and Humsavar for KCNMA1-AS3 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000097125 -- 77,372,297(+) G/A intron_variant
rs1000106090 -- 77,366,412(+) G/A intron_variant
rs1000179285 -- 77,354,344(+) C/T intron_variant
rs1000441144 -- 77,355,502(+) T/C intron_variant
rs1000484572 -- 77,367,387(+) G/A intron_variant

Additional Variant Information for KCNMA1-AS3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KCNMA1-AS3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for KCNMA1-AS3 Gene

Disorders for KCNMA1-AS3 Gene

Additional Disease Information for KCNMA1-AS3

No disorders were found for KCNMA1-AS3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KCNMA1-AS3 Gene

Publications for KCNMA1-AS3 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

No data available for External Links for KCNMA1-AS3 Gene

Products for KCNMA1-AS3 Gene

Sources for KCNMA1-AS3 Gene

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