Aliases for KCNMA1-AS3 Gene

Subcategory (RNA class) for KCNMA1-AS3 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for KCNMA1-AS3 Gene

  • KCNMA1 Antisense RNA 3 2 3 5
  • KCNMA1-AS3 2 5 165
  • NONHSAG006291.2 91
  • HSALNG0079037 164

External Ids for KCNMA1-AS3 Gene

Summaries for KCNMA1-AS3 Gene

GeneCards Summary for KCNMA1-AS3 Gene

KCNMA1-AS3 (KCNMA1 Antisense RNA 3) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for KCNMA1-AS3 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for KCNMA1-AS3 Gene

Genomics for KCNMA1-AS3 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for KCNMA1-AS3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J077349 Enhancer 1.2 Ensembl ENCODE dbSUPER 600.7 +0.1 129 3.6 CREB1 PRDM10 ZNF629 ZNF692 ZNF174 ZHX2 JUND ZIC2 ZSCAN4 PATZ1 KCNMA1-AS3 KCNMA1 ENSG00000228748 ENSG00000224500 LOC105378369
GH10J077405 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 11 +55.4 55429 3.8 PRDM10 ZNF629 IKZF1 ZNF692 JUND PHF21A ZIC2 ZSCAN4 PATZ1 IKZF2 KCNMA1-AS3 LOC105378369 KCNMA1
GH10J077155 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 10.5 -189.7 -189671 11.2 CTCF TEAD4 PRDM10 ZNF629 FOXA1 ZNF776 PKNOX1 REST RAD21 TRIM22 KCNMA1 POLR3A KCNMA1-AS3 KCNMA1-AS2 lnc-DLG5-3
GH10J077390 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 10.8 +42.2 42229 6.6 CTCF TEAD4 ZNF512 IKZF1 FOXA1 ZNF143 REST RAD21 TRIM22 SP1 KCNMA1 KCNMA1-AS3 LOC105378369
GH10J077385 Enhancer 1.1 FANTOM5 Ensembl ENCODE dbSUPER 10.9 +36.8 36829 3.8 ZNF512 PRDM1 SCRT2 JUND FOS SCRT1 ZFHX2 GATA3 JUN EGR2 KCNMA1 KCNMA1-AS3 ENSG00000224500 LOC105378369
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around KCNMA1-AS3 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for KCNMA1-AS3 Gene

Genomic Locations for KCNMA1-AS3 Gene
chr10:77,350,872-77,376,613
(GRCh38/hg38)
Size:
25,742 bases
Orientation:
Plus strand

Genomic View for KCNMA1-AS3 Gene

Genes around KCNMA1-AS3 on UCSC Golden Path with GeneCards custom track
KCNMA1-AS3 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
KCNMA1-AS3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KCNMA1-AS3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KCNMA1-AS3 Gene

Proteins for KCNMA1-AS3 Gene

Post-translational modifications for KCNMA1-AS3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KCNMA1-AS3 Gene

Domains & Families for KCNMA1-AS3 Gene

Gene Families for KCNMA1-AS3 Gene

genes like me logo Genes that share domains with KCNMA1-AS3: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for KCNMA1-AS3 Gene

Function for KCNMA1-AS3 Gene

Phenotypes From GWAS Catalog for KCNMA1-AS3 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KCNMA1-AS3 Gene

Localization for KCNMA1-AS3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for KCNMA1-AS3 Gene

Pathways & Interactions for KCNMA1-AS3 Gene

PathCards logo

SuperPathways for KCNMA1-AS3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for KCNMA1-AS3 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for KCNMA1-AS3 Gene

Drugs & Compounds for KCNMA1-AS3 Gene

No Compound Related Data Available

Transcripts for KCNMA1-AS3 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for KCNMA1-AS3 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007E4AA2_9606 lncRNA 1234 4

HGNC: 51215,

RefSeq: NR_126365,

LNCipedia: KCNMA1-AS3:1,

NONCODE: NONHSAT155709.1,

URS000007050F_9606 lncRNA 701 4

Ensembl: ENST00000418515 (view in UCSC) ,

LncBook: HSALNT0164773,

LNCipedia: KCNMA1-AS3:3,

NONCODE: NONHSAT014157.2,

URS00008B8780_9606 lncRNA 645 3

LncBook: HSALNT0164769,

LNCipedia: KCNMA1-AS3:2,

NONCODE: NONHSAT014156.2,

URS00009BA7D7_9606 lncRNA 1047 2

LncBook: HSALNT0164770,

NONCODE: NONHSAT155710.1,

KCNMA1-AS3 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for KCNMA1-AS3 Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for KCNMA1-AS3 Gene

No ASD Table

Relevant External Links for KCNMA1-AS3 Gene

GeneLoc Exon Structure for
KCNMA1-AS3

Expression for KCNMA1-AS3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for KCNMA1-AS3 Gene

genes like me logo Genes that share expression patterns with KCNMA1-AS3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KCNMA1-AS3 Gene

Orthologs for KCNMA1-AS3 Gene

Evolution for KCNMA1-AS3 Gene

ENSEMBL:
Gene Tree for KCNMA1-AS3 (if available)
TreeFam:
Gene Tree for KCNMA1-AS3 (if available)

No data available for Orthologs for KCNMA1-AS3 Gene

Paralogs for KCNMA1-AS3 Gene

No data available for Paralogs for KCNMA1-AS3 Gene

Variants for KCNMA1-AS3 Gene

Additional dbSNP identifiers (rs#s) for KCNMA1-AS3 Gene

Additional Variant Information for KCNMA1-AS3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KCNMA1-AS3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for KCNMA1-AS3 Gene

Disorders for KCNMA1-AS3 Gene

No disorders were found for KCNMA1-AS3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KCNMA1-AS3 Gene

Publications for KCNMA1-AS3 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

No data available for Mastermind for KCNMA1-AS3 Gene

Products for KCNMA1-AS3 Gene

Sources for KCNMA1-AS3 Gene