Aliases for KCNMA1-AS2 Gene

Subcategory (RNA class) for KCNMA1-AS2 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for KCNMA1-AS2 Gene

  • KCNMA1 Antisense RNA 2 2 3 5
  • KCNMA1-AS2 2 170
  • HSALNG0079032 169
  • NONHSAG006288 94

External Ids for KCNMA1-AS2 Gene

Summaries for KCNMA1-AS2 Gene

GeneCards Summary for KCNMA1-AS2 Gene

KCNMA1-AS2 (KCNMA1 Antisense RNA 2) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for KCNMA1-AS2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for KCNMA1-AS2 Gene

Genomics for KCNMA1-AS2 Gene

GeneHancer (GH) Regulatory Elements for KCNMA1-AS2 Gene

Promoters and enhancers for KCNMA1-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J077390 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 14.6 +252.3 252318 6.6 CTCF RAD21 IKZF1 POLR2A REST ZNF512 TRIM22 IKZF2 ZNF143 SP1 KCNMA1 KCNMA1-AS3 KCNMA1-AS2 RNU6-1266P LOC105378369
GH10J077287 Enhancer 1.1 Ensembl ENCODE 14.7 +149.5 149518 9.4 ZBTB6 FOXA1 TCF7L2 ZNF217 RAD21 ZNF121 TEAD4 SP1 MAFK SP7 KCNMA1-AS3 KCNMA1 KCNMA1-AS2 RNU6-1266P ENSG00000224500 lnc-LRMDA-14
GH10J077537 Enhancer 1.1 Ensembl ENCODE dbSUPER 14.6 +398.1 398117 2.2 ZNF785 ZNF217 ZNF548 MCM2 FOSL2 CTBP1 ZSCAN4 HES1 ZNF239 FOXK2 KCNMA1 KCNMA1-AS3 RNU6-1266P KCNMA1-AS2 ENSG00000213514 RPS24 piR-59425-004 RF00951-017
GH10J077305 Enhancer 0.8 Ensembl 14.7 +165.7 165718 1 ZBTB6 ZNF133 ZNF121 BCL6B ZNF680 GLIS2 ZIC2 ZBTB8A PRDM10 ZNF639 ENSG00000228748 KCNMA1-AS3 POLR3A KCNMA1-AS2 RNU6-1266P ENSG00000224500 lnc-LRMDA-14 KCNMA1
GH10J077136 Enhancer 0.5 Ensembl 16.9 -3.3 -3282 1.4 HDAC1 ZNF24 USF1 KDM1A GLIS1 KCNMA1-AS2 lnc-DLG5-4 KCNMA1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around KCNMA1-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for KCNMA1-AS2 Gene

Genomic Locations for KCNMA1-AS2 Gene
chr10:77,140,783-77,156,789
(GRCh38/hg38)
Size:
16,007 bases
Orientation:
Plus strand
chr10:78,907,410-78,909,858
(GRCh37/hg19)
Size:
2,449 bases
Orientation:
Plus strand

Genomic View for KCNMA1-AS2 Gene

Genes around KCNMA1-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KCNMA1-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KCNMA1-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KCNMA1-AS2 Gene

Proteins for KCNMA1-AS2 Gene

Post-translational modifications for KCNMA1-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KCNMA1-AS2 Gene

Domains & Families for KCNMA1-AS2 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for KCNMA1-AS2 Gene

Function for KCNMA1-AS2 Gene

Phenotypes From GWAS Catalog for KCNMA1-AS2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KCNMA1-AS2 Gene

Localization for KCNMA1-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for KCNMA1-AS2 Gene

Pathways & Interactions for KCNMA1-AS2 Gene

PathCards logo

SuperPathways for KCNMA1-AS2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for KCNMA1-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KCNMA1-AS2 Gene

Drugs & Compounds for KCNMA1-AS2 Gene

No Compound Related Data Available

Transcripts for KCNMA1-AS2 Gene

mRNA/cDNA for KCNMA1-AS2 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(5) RNACentral transcripts :
(4) LNCipedia transcripts :
(3) NONCODE transcripts :
(4) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for KCNMA1-AS2 Gene

No ASD Table

Relevant External Links for KCNMA1-AS2 Gene

GeneLoc Exon Structure for
KCNMA1-AS2
ECgene alternative splicing isoforms for
KCNMA1-AS2

Expression for KCNMA1-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for KCNMA1-AS2 Gene

genes like me logo Genes that share expression patterns with KCNMA1-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KCNMA1-AS2 Gene

Orthologs for KCNMA1-AS2 Gene

Evolution for KCNMA1-AS2 Gene

ENSEMBL:
Gene Tree for KCNMA1-AS2 (if available)
TreeFam:
Gene Tree for KCNMA1-AS2 (if available)

No data available for Orthologs for KCNMA1-AS2 Gene

Paralogs for KCNMA1-AS2 Gene

No data available for Paralogs for KCNMA1-AS2 Gene

Variants for KCNMA1-AS2 Gene

Sequence variations from dbSNP and Humsavar for KCNMA1-AS2 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000174874 -- 77,144,748(+) C/T intron_variant
rs1000459016 -- 77,145,925(+) G/C intron_variant
rs1000845798 -- 77,148,160(+) C/T intron_variant
rs1001288899 -- 77,148,901(+) C/T intron_variant
rs1001482011 -- 77,147,518(+) A/G intron_variant

Additional Variant Information for KCNMA1-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KCNMA1-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for KCNMA1-AS2 Gene

Disorders for KCNMA1-AS2 Gene

Additional Disease Information for KCNMA1-AS2

No disorders were found for KCNMA1-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KCNMA1-AS2 Gene

Publications for KCNMA1-AS2 Gene

No publications were found for KCNMA1-AS2 Gene.

No data available for External Links for KCNMA1-AS2 Gene

Products for KCNMA1-AS2 Gene

Sources for KCNMA1-AS2 Gene