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Aliases for KCNJ6-AS1 Gene

Subcategory (RNA class) for KCNJ6-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for KCNJ6-AS1 Gene

  • KCNJ6 Antisense RNA 1 2 3 5
  • KCNJ6 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • KCNJ6-IT1 3

External Ids for KCNJ6-AS1 Gene

Previous HGNC Symbols for KCNJ6-AS1 Gene

  • KCNJ6-IT1

Previous GeneCards Identifiers for KCNJ6-AS1 Gene

  • GC21M039091
  • GC21M037717

Summaries for KCNJ6-AS1 Gene

GeneCards Summary for KCNJ6-AS1 Gene

KCNJ6-AS1 (KCNJ6 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for KCNJ6-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KCNJ6-AS1 Gene

Genomics for KCNJ6-AS1 Gene

GeneHancer (GH) Regulatory Elements for KCNJ6-AS1 Gene

Promoters and enhancers for KCNJ6-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21I037562 Enhancer 1.9 FANTOM5 Ensembl ENCODE dbSUPER 17.4 -150.7 -150650 5.6 HDGF PKNOX1 CLOCK SMAD1 FOXA2 ARNT ARID4B SIN3A ZNF2 ZBTB7B LOC105372798 ENSG00000242553 DYRK1A KCNJ6-AS1 ENSG00000224790 TTC3 GC21M037650
GH21I037582 Enhancer 0.7 dbSUPER 16.2 -133.4 -133392 0.9 CTCF CEBPG RAD21 CC2D1A FOXK2 ZNF143 SMC3 ZNF654 E2F5 CEBPB KCNJ6-AS1 LOC105372798 GC21M037650
GH21I037590 Enhancer 0.6 ENCODE 16.7 -123.0 -123007 4 BACH1 DPF2 ZIC2 ETS1 OSR2 ZNF121 ZSCAN5C IKZF1 ZNF18 MGA KCNJ6-AS1 PIGP LOC105372798 GC21M037650
GH21I037546 Enhancer 1.2 ENCODE dbSUPER 8.3 -168.4 -168427 1.6 PKNOX1 FEZF1 ZNF121 ZNF213 KLF7 SP3 TSHZ1 ZNF488 ZNF623 ZNF610 TTC3 ENSG00000242553 DYRK1A KCNJ6-AS1 GC21M037562 PIR42486 PIR60123
GH21I037574 Enhancer 0.5 dbSUPER 18.2 -140.3 -140337 2.6 ZNF121 SCRT2 CBFA2T3 CBFA2T2 ATF7 ZSCAN29 ATF2 KCNJ6-AS1 ENSG00000207416 HLCS MRPL20P1 LOC105372798 GC21M037650
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around KCNJ6-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for KCNJ6-AS1 Gene

Genomic Locations for KCNJ6-AS1 Gene
chr21:37,715,917-37,739,035
(GRCh38/hg38)
Size:
23,119 bases
Orientation:
Plus strand
chr21:39,089,405-39,091,872
(GRCh37/hg19)

Genomic View for KCNJ6-AS1 Gene

Genes around KCNJ6-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KCNJ6-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KCNJ6-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KCNJ6-AS1 Gene

Proteins for KCNJ6-AS1 Gene

Post-translational modifications for KCNJ6-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KCNJ6-AS1 Gene

Domains & Families for KCNJ6-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KCNJ6-AS1 Gene

Function for KCNJ6-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KCNJ6-AS1 Gene

Localization for KCNJ6-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for KCNJ6-AS1 Gene

Pathways & Interactions for KCNJ6-AS1 Gene

SuperPathways for KCNJ6-AS1 Gene

No Data Available

Interacting Proteins for KCNJ6-AS1 Gene

Gene Ontology (GO) - Biological Process for KCNJ6-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KCNJ6-AS1 Gene

Drugs & Compounds for KCNJ6-AS1 Gene

No Compound Related Data Available

Transcripts for KCNJ6-AS1 Gene

mRNA/cDNA for KCNJ6-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for KCNJ6-AS1 Gene

No ASD Table

Relevant External Links for KCNJ6-AS1 Gene

GeneLoc Exon Structure for
KCNJ6-AS1
ECgene alternative splicing isoforms for
KCNJ6-AS1

Expression for KCNJ6-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for KCNJ6-AS1 Gene

genes like me logo Genes that share expression patterns with KCNJ6-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KCNJ6-AS1 Gene

Orthologs for KCNJ6-AS1 Gene

Evolution for KCNJ6-AS1 Gene

ENSEMBL:
Gene Tree for KCNJ6-AS1 (if available)
TreeFam:
Gene Tree for KCNJ6-AS1 (if available)

No data available for Orthologs for KCNJ6-AS1 Gene

Paralogs for KCNJ6-AS1 Gene

No data available for Paralogs for KCNJ6-AS1 Gene

Variants for KCNJ6-AS1 Gene

Sequence variations from dbSNP and Humsavar for KCNJ6-AS1 Gene

SNP ID Clin Chr 21 pos Variation AA Info Type
rs786204794 pathogenic, Keppen-Lubinsky syndrome 37,714,700(+) TGGTGGT/TGGT upstream_transcript_variant
rs786204795 pathogenic, Keppen-Lubinsky syndrome 37,714,697(+) C/T upstream_transcript_variant
rs1064796826 uncertain-significance, not specified 37,715,081(+) C/A upstream_transcript_variant
rs1000012826 -- 37,721,773(+) A/G intron_variant
rs1000064337 -- 37,715,116(+) C/A upstream_transcript_variant

Additional Variant Information for KCNJ6-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KCNJ6-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for KCNJ6-AS1 Gene

Disorders for KCNJ6-AS1 Gene

No disorders were found for KCNJ6-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for KCNJ6-AS1 Gene

Publications for KCNJ6-AS1 Gene

No publications were found for KCNJ6-AS1 Gene.

Products for KCNJ6-AS1 Gene

Sources for KCNJ6-AS1 Gene

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