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Aliases for KCNIP2-AS1 Gene

Subcategory (RNA class) for KCNIP2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for KCNIP2-AS1 Gene

  • KCNIP2 Antisense RNA 1 2 3 5

External Ids for KCNIP2-AS1 Gene

Previous GeneCards Identifiers for KCNIP2-AS1 Gene

  • GC10P103579

Summaries for KCNIP2-AS1 Gene

GeneCards Summary for KCNIP2-AS1 Gene

KCNIP2-AS1 (KCNIP2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for KCNIP2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KCNIP2-AS1 Gene

Genomics for KCNIP2-AS1 Gene

GeneHancer (GH) Regulatory Elements for KCNIP2-AS1 Gene

Promoters and enhancers for KCNIP2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J101814 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 600.7 -1.9 -1867 6.4 CC2D1A SP1 ELF3 SIX5 ZNF148 NKRF POLR2A MLLT1 ZNF121 CEBPG KCNIP2-AS1 OGA PPRC1 HPS6 LDB1 GBF1 MRPL43 TWNK SUFU NPM3
GH10J102761 Enhancer 1.4 Ensembl ENCODE dbSUPER 21.3 +945.9 945933 7.2 CC2D1A CBFA2T2 ZNF384 NFIB TRIM24 RELA SP7 SP1 MZF1 ZNF639 NOLC1 SFXN2 WBP1L KCNIP2-AS1 RPEL1 AS3MT CYP17A1-AS1 CYP17A1 PTGES3P4 PFN1P11
GH10J102710 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE 10.7 +894.2 894238 6.2 ZFX SP1 MNT NKRF ZNF121 POLR2A ZNF384 ZSCAN21 NCOA3 MYC ARL3 SFXN2 KCNIP2-AS1 WBP1L MFSD13A AS3MT HPS6 FBXL15 GC10P102705
GH10J101059 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 9.9 -755.3 -755267 9.2 SP1 ZFX CC2D1A ELF3 CTCF ZKSCAN8 MNT ZNF148 NKRF POLR2A KAZALD1 BTRC ENSG00000272572 KCNIP2-AS1 SFXN3 MRPL43 ENSG00000273162 GC10M101091
GH10J102000 Promoter/Enhancer 1.6 Ensembl ENCODE dbSUPER 10.1 +183.3 183310 4.4 SP1 ZNF687 SP7 RELA CREM MLLT1 ZBED1 IKZF1 ZBTB8A BACH1 HPS6 GBF1 PPRC1 LDB1 ARL3 KCNIP2 ARMH3 KCNIP2-AS1 OGA SFXN2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around KCNIP2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for KCNIP2-AS1 Gene

Genomic Locations for KCNIP2-AS1 Gene
chr10:101,819,068-101,828,889
(GRCh38/hg38)
Size:
9,822 bases
Orientation:
Plus strand
chr10:103,578,825-103,588,646
(GRCh37/hg19)
Size:
9,822 bases
Orientation:
Plus strand

Genomic View for KCNIP2-AS1 Gene

Genes around KCNIP2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KCNIP2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KCNIP2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KCNIP2-AS1 Gene

Proteins for KCNIP2-AS1 Gene

Post-translational modifications for KCNIP2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KCNIP2-AS1 Gene

Domains & Families for KCNIP2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KCNIP2-AS1 Gene

Function for KCNIP2-AS1 Gene

Phenotypes From GWAS Catalog for KCNIP2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KCNIP2-AS1 Gene

Localization for KCNIP2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for KCNIP2-AS1 Gene

Pathways & Interactions for KCNIP2-AS1 Gene

PathCards logo

SuperPathways for KCNIP2-AS1 Gene

No Data Available

Interacting Proteins for KCNIP2-AS1 Gene

Gene Ontology (GO) - Biological Process for KCNIP2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KCNIP2-AS1 Gene

Drugs & Compounds for KCNIP2-AS1 Gene

No Compound Related Data Available

Transcripts for KCNIP2-AS1 Gene

mRNA/cDNA for KCNIP2-AS1 Gene

(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for KCNIP2-AS1 Gene

No ASD Table

Relevant External Links for KCNIP2-AS1 Gene

GeneLoc Exon Structure for
KCNIP2-AS1
ECgene alternative splicing isoforms for
KCNIP2-AS1

Expression for KCNIP2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for KCNIP2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for KCNIP2-AS1 Gene

This gene is overexpressed in Heart - Atrial Appendage (x7.0), Heart - Left Ventricle (x6.1), Brain - Nucleus accumbens (basal ganglia) (x6.1), and Brain - Putamen (basal ganglia) (x4.4).
genes like me logo Genes that share expression patterns with KCNIP2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KCNIP2-AS1 Gene

Orthologs for KCNIP2-AS1 Gene

Evolution for KCNIP2-AS1 Gene

ENSEMBL:
Gene Tree for KCNIP2-AS1 (if available)
TreeFam:
Gene Tree for KCNIP2-AS1 (if available)

No data available for Orthologs for KCNIP2-AS1 Gene

Paralogs for KCNIP2-AS1 Gene

No data available for Paralogs for KCNIP2-AS1 Gene

Variants for KCNIP2-AS1 Gene

Sequence variations from dbSNP and Humsavar for KCNIP2-AS1 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000017419 -- 101,827,192(+) G/A intron_variant
rs1000049837 -- 101,826,893(+) C/A/G intron_variant
rs1000059290 -- 101,817,285(+) G/A upstream_transcript_variant
rs1000323637 -- 101,823,026(+) G/A intron_variant
rs1000923422 -- 101,821,403(+) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for KCNIP2-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv951004 CNV deletion 24416366

Additional Variant Information for KCNIP2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KCNIP2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for KCNIP2-AS1 Gene

Disorders for KCNIP2-AS1 Gene

Additional Disease Information for KCNIP2-AS1

No disorders were found for KCNIP2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KCNIP2-AS1 Gene

Publications for KCNIP2-AS1 Gene

No publications were found for KCNIP2-AS1 Gene.

Products for KCNIP2-AS1 Gene

Sources for KCNIP2-AS1 Gene

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