Aliases for KCNIP2 Gene
Aliases for KCNIP2 Gene
External Ids for KCNIP2 Gene
- HGNC: 15522
- Entrez Gene: 30819
- Ensembl: ENSG00000120049
- OMIM: 604661
- UniProtKB: Q9NS61
Previous GeneCards Identifiers for KCNIP2 Gene
- GC10M102478
- GC10M102819
- GC10M103716
- GC10M103250
- GC10M103575
- GC10M097216
Summaries for KCNIP2 Gene
-
This gene encodes a member of the family of voltage-gated potassium (Kv) channel-interacting proteins (KCNIPs), which belongs to the recoverin branch of the EF-hand superfamily. Members of the KCNIP family are small calcium binding proteins. They all have EF-hand-like domains, and differ from each other in the N-terminus. They are integral subunit components of native Kv4 channel complexes. They may regulate A-type currents, and hence neuronal excitability, in response to changes in intracellular calcium. Multiple alternatively spliced transcript variants encoding distinct isoforms have been identified from this gene. [provided by RefSeq, Jul 2008]
GeneCards Summary for KCNIP2 Gene
KCNIP2 (Potassium Voltage-Gated Channel Interacting Protein 2) is a Protein Coding gene. Diseases associated with KCNIP2 include Spinocerebellar Ataxia Type 19/22 and Brugada Syndrome. Among its related pathways are Cardiac conduction and Antiarrhythmic Pathway, Pharmacodynamics. Gene Ontology (GO) annotations related to this gene include calcium ion binding and protein N-terminus binding. An important paralog of this gene is KCNIP4.
UniProtKB/Swiss-Prot for KCNIP2 Gene
-
Regulatory subunit of Kv4/D (Shal)-type voltage-gated rapidly inactivating A-type potassium channels. Modulates channel density, inactivation kinetics and rate of recovery from inactivation in a calcium-dependent and isoform-specific manner. In vitro, modulates KCND2/Kv4.2 and KCND3/Kv4.3 currents. Involved in KCND2 and KCND3 trafficking to the cell surface. May be required for the expression of I(To) currents in the heart (By similarity).
-
Voltage-gated potassium channels (KV) belong to the 6-TM family of potassium channel that also comprises the Ca2+-activated Slo (actually 7-TM) and the Ca2+-activated SK subfamilies. The alpha-subunits contain a single pore-forming region and combine to form tetramers.
Additional gene information for KCNIP2 Gene
No data available for CIViC summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KCNIP2 Gene
Genomics for KCNIP2 Gene
GeneHancer (GH) Regulatory Elements for KCNIP2 Gene
Promoters and enhancers for KCNIP2 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data dump
GeneHancers around KCNIP2 on UCSC Golden Path with GeneCards custom track
- Top Transcription factor binding sites by QIAGEN in the KCNIP2 gene promoter:
Regulatory Element Products
Genomic Locations for KCNIP2 Gene
Genomic Locations for KCNIP2 Gene
- chr10:101,825,974-101,843,920
- (GRCh38/hg38)
- Size:
- 17,947 bases
- Orientation:
- Minus strand
- chr10:103,585,731-103,603,677
- (GRCh37/hg19)
Genomic View for KCNIP2 Gene
Genes around KCNIP2 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 10q24.32 by Ensembl
- 10q24.32 by Entrez Gene
- 10q24.32 by HGNC
KCNIP2 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for KCNIP2 Gene
Proteins for KCNIP2 Gene
-
Protein details for KCNIP2 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q9NS61-KCIP2_HUMAN
- Recommended name:
- Kv channel-interacting protein 2
- Protein Accession:
- Q9NS61
- A6NJE5
- A8MQ75
- Q3YAC6
- Q3YAC8
- Q3YAC9
- Q7Z6F1
- Q96K86
- Q96T41
- Q96T42
- Q96T43
- Q96T44
- Q9H0N4
- Q9HD10
- Q9HD11
- Q9NS60
- Q9NY10
- Q9NZI1
Protein attributes for KCNIP2 Gene
- Size:
- 270 amino acids
- Molecular mass:
- 30907 Da
- Quaternary structure:
-
- Component of heteromultimeric potassium channels. Identified in potassium channel complexes containing KCND1, KCND2, KCND3, KCNIP1, KCNIP2, KCNIP3, KCNIP4, DPP6 and DPP10 (By similarity). The KCND2-KCNIP2 channel complex contains four KCND2 and four KCNIP2 subunits (PubMed:14623880, PubMed:14980201). Interacts with KCND2 (PubMed:10676964, PubMed:14623880, PubMed:14980201). Isoform 1 and isoform 3 interact with KCND3 isoform 1. Probably part of a complex consisting of KCNIP1, KCNIP2 isoform 3 and KCND2. At least isoform 2 and isoform 3 can self-associate to form homodimers and homotetramers. Isoform 3 interacts with KCNIP1 in a calcium-dependent manner.
Protein Expression for KCNIP2 Gene
Post-translational modifications for KCNIP2 Gene
- Palmitoylated. Palmitoylation enhances association with the plasma membrane.
- Modification sites at PhosphoSitePlus
- Modification sites at neXtProt
Other Protein References for KCNIP2 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
- Novus Biologicals Antibodies for KCNIP2
-
Abcam antibodies for KCNIP2
- Invitrogen Antibodies for KCNIP2
- GeneTex KCNIP2 antibody for KCNIP2
-
Santa Cruz Biotechnology (SCBT) Antibodies for KCNIP2
Protein Products
- Search Origene for MassSpec and Protein Over-expression Lysates for KCNIP2
- Origene Custom Protein Services for KCNIP2
- antibodies-online: Search results for 8 available KCNIP2 Proteins ranked by validation data
- Compare Top KCNIP2 Proteins
-
Quality Products:
- Search GeneTex for Proteins for KCNIP2
-
Abcam proteins for KCNIP2
Assay Products
No data available for DME Specific Peptides for KCNIP2 Gene
Domains & Families for KCNIP2 Gene
Gene Families for KCNIP2 Gene
- HGNC:
- Human Protein Atlas (HPA):
-
- Predicted intracellular proteins
Protein Domains for KCNIP2 Gene
- InterPro:
- Blocks:
- ProtoNet:
Suggested Antigen Peptide Sequences for KCNIP2 Gene
- GenScript: Design optimal peptide antigens:
-
- Kv channel interacting protein 2 (A6QL43_HUMAN)
- cDNA FLJ37349 fis, clone BRAMY2021746, highly similar to Kv channel-interacting protein 2 (B3KSZ5_HUMAN)
- Potassium channel-interacting protein 2 (KCIP2_HUMAN)
- Kv channel interacting protein 2 transcript variant 9 (Q09MK0_HUMAN)
- Potassium channel interacting protein 2 (Q3YAC6_HUMAN)
Graphical View of Domain Structure for InterPro Entry
Q9NS61- Family:
-
- Belongs to the recoverin family.
Function for KCNIP2 Gene
Molecular function for KCNIP2 Gene
- UniProtKB/Swiss-Prot Function:
- Regulatory subunit of Kv4/D (Shal)-type voltage-gated rapidly inactivating A-type potassium channels. Modulates channel density, inactivation kinetics and rate of recovery from inactivation in a calcium-dependent and isoform-specific manner. In vitro, modulates KCND2/Kv4.2 and KCND3/Kv4.3 currents. Involved in KCND2 and KCND3 trafficking to the cell surface. May be required for the expression of I(To) currents in the heart (By similarity).
Phenotypes From GWAS Catalog for KCNIP2 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005250 | contributes_to A-type (transient outward) potassium channel activity | TAS | 26016905 |
| GO:0005267 | potassium channel activity | IEA | -- |
| GO:0005509 | calcium ion binding | TAS | 11287421 |
| GO:0005515 | protein binding | IPI | 14623880 |
| GO:0015459 | potassium channel regulator activity | IDA | 21493962 |
Phenotypes for KCNIP2 Gene
- MGI mutant phenotypes for KCNIP2:
- inferred from 2 alleles
- GenomeRNAi human phenotypes for KCNIP2:
-
- Increased viability
- Increased vaccinia virus (VACV) infection
- Decreased human papilloma virus 16 (HPV16) pseudovirus infection
- Synthetic lethal with c-Myc after tamoxifen stimulation
- Decreased shRNA abundance
- Weakly decreased NFAT1-GFP nuclear translocation
- Increased number of cells in monopolar arrest with EMD534085 (a Kinesin-5 inhibitor)
- Increased Nanog expression
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for KCNIP2
-
- Search ViGene Biosciences for KCNIP2
CRISPR Products
-
OriGene CRISPR knockouts for KCNIP2
- genomics-online: gRNA clones - Search results for 187 available KCNIP2 gene related products
- Overview of 187 available KCNIP2 gene related products
-
Recommended
- Applied Biological Materials CRISPR for KCNIP2
-
Vectors and viruses for KO, Activation, Repression, and more
-
Santa Cruz Biotechnology (SCBT) CRISPR for KCNIP2
- GenScript: Design CRISPR guide RNA sequences for KCNIP2
miRNA for KCNIP2 Gene
- miRTarBase miRNAs that target KCNIP2
miRNA Products
- Search ViGene Biosciences for KCNIP2
Inhibitory RNA Products
- Origene RNAi, sirna, and shrna products in human, mouse, rat for KCNIP2
- Browse OriGene Inhibitory RNA Products For KCNIP2
- genomics-online: shRNA clones - Search results for 187 available KCNIP2 gene related products
- Overview of 187 available KCNIP2 gene related products
-
Recommended
Clone Products
-
OriGene ORF clones in human for KCNIP2
- RG211485
- RC211485L2
- RC211485L1
- RC211485
- RG212555
- RC212555L2
- RC212555L1
- RC212555
- RG212601
- RC212601L2
- RC212601L1
- RC212601
- RG213178
- RC213178L2
- RC213178L1
- RC213178
- RG203823
- RC203823L2
- RC203823L1
- RC203823
- RG219876
- RC219876L2
- RC219876L1
- RC219876
- RG213131
- RC213131L2
- RC213131L1
- RC213131
- RC211485L2V
- RC211485L1V
- RC212555L2V
- RC212555L1V
- RC212601L2V
- RC212601L1V
- RC213178L2V
- RC213178L1V
- RC203823L2V
- RC203823L1V
- RC219876L2V
- RC219876L1V
- RC213131L2V
- RC213131L1V
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Sino Biological Human cDNA Clone for KCNIP2
- VectorBuilder custom plasmid, inducible vectors for KCNIP2
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for KCNIP2
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Addgene plasmids for KCNIP2
- genomics-online: cdna clones - Search results for 187 available KCNIP2 gene related products
- Overview of 187 available KCNIP2 gene related products
-
Recommended
- orf clones - Search results for 187 available KCNIP2 gene related products
- Overview of 187 available KCNIP2 gene related products
-
Recommended
- Applied Biological Materials Clones for KCNIP2
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
Cell Line Products
-
Horizon Cell Lines for KCNIP2
No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for KCNIP2 Gene
Localization for KCNIP2 Gene
Subcellular locations from UniProtKB/Swiss-Prot for KCNIP2 Gene
- Isoform 1: Cell membrane; Lipid-anchor. Note=Detected on lipid rafts (By similarity). {ECO:0000250 UniProtKB:Q9JM59}.
- Isoform 2: Cell membrane; Lipid-anchor.
- Isoform 6: Cell membrane; Lipid-anchor.
| Compartment | Confidence |
|---|---|
| plasma membrane | 5 |
| nucleus | 2 |
| cytosol | 2 |
| endoplasmic reticulum | 1 |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005737 | cytoplasm | IDA | 11287421 |
| GO:0005886 | plasma membrane | TAS | -- |
| GO:0008076 | voltage-gated potassium channel complex | NAS | 11287421 |
| GO:0016020 | membrane | IEA | -- |
| GO:0034705 | potassium channel complex | TAS | 26016905 |
No data available for Subcellular locations from the Human Protein Atlas (HPA) for KCNIP2 Gene
Pathways & Interactions for KCNIP2 Gene
| SuperPathway | Contained pathways | ||
|---|---|---|---|
| 1 | Cardiac conduction | ||
| 2 | Antiarrhythmic Pathway, Pharmacodynamics | ||
Pathways by source for KCNIP2 Gene
3 Reactome pathways for KCNIP2 Gene
1 PharmGKB pathway for KCNIP2 Gene
Interacting Proteins for KCNIP2 Gene
Selected Interacting proteins:
ENSP00000420040
Q9NS61-KCIP2_HUMAN
for KCNIP2 Gene via
STRING
IID
UniProtKB
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005513 | detection of calcium ion | TAS | 10676964 |
| GO:0006810 | transport | IEA | -- |
| GO:0006811 | ion transport | IEA | -- |
| GO:0006813 | potassium ion transport | TAS | 11287421 |
| GO:0006936 | muscle contraction | NAS | 11287421 |
No data available for SIGNOR curated interactions for KCNIP2 Gene
Drugs & Compounds for KCNIP2 Gene
| Name | Synonyms | Role | CAS Number | PubChem IDs | PubMed IDs |
|---|
(4) Tocris Compounds for KCNIP2 Gene
| Compound | Action | Cas Number |
|---|---|---|
| Chromanol 293B | IKs blocker. Also blocks ICFTR | 163163-23-3 |
| Flupirtine maleate | KV7 channel activator | 75507-68-5 |
| Kaliotoxin | KV and KCa blocker | 145199-73-1 |
| MaxiPost | Potassium channel modulator; exerts subtype-specific effects | 187523-35-9 |
Transcripts for KCNIP2 Gene
mRNA/cDNA for KCNIP2 Gene
- (13) REFSEQ mRNAs :
- (27) Additional mRNA sequences :
- (77) Selected AceView cDNA sequences:
- (13) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for KCNIP2 Gene
CRISPR Products
-
OriGene CRISPR knockouts for KCNIP2
- genomics-online: gRNA clones - Search results for 187 available KCNIP2 gene related products
- Overview of 187 available KCNIP2 gene related products
-
Recommended
- Applied Biological Materials CRISPR for KCNIP2
-
Vectors and viruses for KO, Activation, Repression, and more
-
Santa Cruz Biotechnology (SCBT) CRISPR for KCNIP2
- GenScript: Design CRISPR guide RNA sequences for KCNIP2
miRNA Products
- Search ViGene Biosciences for KCNIP2
Inhibitory RNA Products
- Origene RNAi, sirna, and shrna products in human, mouse, rat for KCNIP2
- Browse OriGene Inhibitory RNA Products For KCNIP2
- genomics-online: shRNA clones - Search results for 187 available KCNIP2 gene related products
- Overview of 187 available KCNIP2 gene related products
-
Recommended
Clone Products
-
OriGene ORF clones in human for KCNIP2
- RG211485
- RC211485L2
- RC211485L1
- RC211485
- RG212555
- RC212555L2
- RC212555L1
- RC212555
- RG212601
- RC212601L2
- RC212601L1
- RC212601
- RG213178
- RC213178L2
- RC213178L1
- RC213178
- RG203823
- RC203823L2
- RC203823L1
- RC203823
- RG219876
- RC219876L2
- RC219876L1
- RC219876
- RG213131
- RC213131L2
- RC213131L1
- RC213131
- RC211485L2V
- RC211485L1V
- RC212555L2V
- RC212555L1V
- RC212601L2V
- RC212601L1V
- RC213178L2V
- RC213178L1V
- RC203823L2V
- RC203823L1V
- RC219876L2V
- RC219876L1V
- RC213131L2V
- RC213131L1V
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Sino Biological Human cDNA Clone for KCNIP2
- VectorBuilder custom plasmid, inducible vectors for KCNIP2
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for KCNIP2
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Addgene plasmids for KCNIP2
- genomics-online: cdna clones - Search results for 187 available KCNIP2 gene related products
- Overview of 187 available KCNIP2 gene related products
-
Recommended
- orf clones - Search results for 187 available KCNIP2 gene related products
- Overview of 187 available KCNIP2 gene related products
-
Recommended
- Applied Biological Materials Clones for KCNIP2
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
| ExUns: | 1 | ^ | 2a | · | 2b | ^ | 3a | · | 3b | ^ | 4a | · | 4b | · | 4c | ^ | 5a | · | 5b | ^ | 6a | · | 6b | ^ | 7a | · | 7b | ^ | 8 | ^ | 9a | · | 9b | ^ | 10 | ^ | 11a | · | 11b | ^ | 12a | · | 12b | · | 12c | ^ | 13a | · | 13b |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| SP4: | - | - | - | - | |||||||||||||||||||||||||||||||||||||||||||||
| SP5: | - | - | - | - | - | - | - | - | - | ||||||||||||||||||||||||||||||||||||||||
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| SP7: | - | - | - | - | - | - | - | - | - | - | |||||||||||||||||||||||||||||||||||||||
| SP8: | - | - | |||||||||||||||||||||||||||||||||||||||||||||||
| SP9: | - | - | - | - | - | - | - | - | - | ||||||||||||||||||||||||||||||||||||||||
| SP10: | - | - | - | - | - | - | - | - | |||||||||||||||||||||||||||||||||||||||||
| SP11: | - | - | - | - | - | - | - | - | - | - | |||||||||||||||||||||||||||||||||||||||
| SP12: |
Expression for KCNIP2 Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
- Brain (Nervous System)
-
Eye (Sensory Organs)
- GABAergic Amacrine Cells Inner Nuclear Layer
-
Neurons
- GABAergic Amacrine Cells Inner Nuclear Layer
- Neural Tube (Nervous System)
-
Heart (Cardiovascular System)
mRNA differential expression in normal tissues according to GTEx for KCNIP2 Gene
This gene is overexpressed in Heart - Atrial Appendage (x7.3), Brain - Nucleus accumbens (basal ganglia) (x6.5), Heart - Left Ventricle (x6.5), Brain - Putamen (basal ganglia) (x6.0), and Brain - Caudate (basal ganglia) (x5.1).
This gene is overexpressed in Retina (69.0).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for KCNIP2 Gene
NURSA nuclear receptor signaling pathways regulating expression of KCNIP2 Gene:
KCNIP2SOURCE GeneReport for Unigene cluster for KCNIP2 Gene:
Hs.97044mRNA Expression by UniProt/SwissProt for KCNIP2 Gene:
Q9NS61-KCIP2_HUMAN
Tissue specificity:
Expressed in brain. Colocalizes with KCND2 in excitatory neurons including cortical and hippocampal CA1 pyramidal cells. Isoform 3 is expressed in heart and in umbilical vein endothelial cells. Not expressed in fetal heart.
Evidence on tissue expression from TISSUES for KCNIP2 Gene
- Nervous system(4.9)
- Heart(4.7)
- Muscle(4.7)
- Kidney(4.2)
Primer Products
-
OriGene qPCR primer pairs for KCNIP2
-
OriGene qPCR primer pairs and template standards for KCNIP2
- genomics-online: primer clones - Search results for 187 available KCNIP2 gene related products
- Overview of 187 available KCNIP2 gene related products
-
Recommended
Gene Expression Assay Products
No data available for Phenotype-based relationships between genes and organs from Gene ORGANizer for KCNIP2 Gene
Orthologs for KCNIP2 Gene
This gene was present in the common ancestor of animals and fungi.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | KCNIP2 33 34 |
|
||
| cow (Bos Taurus) |
Mammalia | KCNIP2 34 |
|
OneToOne | |
| dog (Canis familiaris) |
Mammalia | KCHIP2 34 |
|
OneToOne | |
| KCNIP2 33 |
|
||||
| mouse (Mus musculus) |
Mammalia | Kcnip2 33 16 34 |
|
||
| rat (Rattus norvegicus) |
Mammalia | LOC100911951 33 |
|
||
| oppossum (Monodelphis domestica) |
Mammalia | KCNIP2 34 |
|
OneToOne | |
| platypus (Ornithorhynchus anatinus) |
Mammalia | KCNIP2 34 |
|
OneToOne | |
| chicken (Gallus gallus) |
Aves | KCNIP2 33 34 |
|
||
| lizard (Anolis carolinensis) |
Reptilia | KCNIP2 34 |
|
OneToOne | |
| tropical clawed frog (Silurana tropicalis) |
Amphibia | kcnip2 33 |
|
||
| zebrafish (Danio rerio) |
Actinopterygii | LOC100003947 33 |
|
||
| kcnip2 34 |
|
OneToMany | |||
| KCNIP2 (1 of 2) 34 |
|
OneToMany | |||
| fruit fly (Drosophila melanogaster) |
Insecta | CG5890 35 34 |
|
||
| CG42683 34 |
|
ManyToMany | |||
| worm (Caenorhabditis elegans) |
Secernentea | ncs-7 34 |
|
ManyToMany | |
| ncs-4 34 |
|
ManyToMany | |||
| baker's yeast (Saccharomyces cerevisiae) |
Saccharomycetes | FRQ1 34 |
|
OneToMany | |
| sea squirt (Ciona savignyi) |
Ascidiacea | -- 34 |
|
OneToMany |
- Species where no ortholog for KCNIP2 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
Paralogs for KCNIP2 Gene
Paralogs for KCNIP2 Gene
(15) SIMAP similar genes for KCNIP2 Gene using alignment to 4 proteins:
Variants for KCNIP2 Gene
| SNP ID | Clin | Chr 10 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1000017419 | -- | 101,827,192(-) | G/A | 3_prime_UTR_variant, downstream_transcript_variant, genic_downstream_transcript_variant | |
| rs1000049837 | -- | 101,826,893(-) | C/G | 3_prime_UTR_variant, genic_downstream_transcript_variant | |
| rs1000283419 | -- | 101,840,513(-) | G/A | genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant | |
| rs1000521020 | -- | 101,835,839(-) | A/G | genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant | |
| rs1000616254 | -- | 101,838,959(-) | C/T | genic_upstream_transcript_variant, intron_variant |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| nsv1126267 | CNV | deletion | 24896259 |
| nsv951004 | CNV | deletion | 24416366 |
Residual Variation Intolerance Score:
60.9% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
0.67;
14.28% of all genes are more intolerant (likely to be disease-causing)
Additional Variant Information for KCNIP2 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- KCNIP2
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for KCNIP2 Gene
Disorders for KCNIP2 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| spinocerebellar ataxia type 19/22 |
|
|
| brugada syndrome |
|
|
| dilated cardiomyopathy |
|
|
Search KCNIP2 in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for KCNIP2
- Genetic Association Database
- (GAD)
- Human Genome Epidemiology Navigator
- (HuGE)
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
No data available for UniProtKB/Swiss-Prot and Genatlas for KCNIP2 Gene
Publications for KCNIP2 Gene
- Structure, alternative splicing, and expression of the human and mouse KCNIP gene family. (PMID: 16112838) Pruunsild P … Timmusk T (Genomics 2005) 3 4 22 58
- Modulation of Kv4.3 current by accessory subunits. (PMID: 12297301) Deschênes I … Tomaselli GF (FEBS letters 2002) 3 4 22 58
- Molecular cloning and expression of the novel splice variants of K(+) channel-interacting protein 2. (PMID: 11263977) Ohya S … Imaizumi Y (Biochemical and biophysical research communications 2001) 3 4 22 58
- Modulation of A-type potassium channels by a family of calcium sensors. (PMID: 10676964) An WF … Rhodes KJ (Nature 2000) 2 3 4 58
- [Atrial myocytes KChIP2 mRNA expression in rheumatic heart disease patients with atrial fibrillation]. (PMID: 19927631) Tan XQ … Zeng XR (Zhonghua xin xue guan bing za zhi 2009) 3 22 58
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Sources for KCNIP2 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
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- (13) InterPro
- (14) ProtoNet
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- (21) IntAct
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- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) Cloud-Clone Corp.
- (69) OCA
- (70) Proteopedia
- (71) MOPED
- (72) neXtProt
- (73) Reactome
- (74) GeneGo (Thomson Reuters)
- (75) fRNAdb
- (76) DISEASES
- (77) SIMAP
- (78) GenomeRNAi
- (79) LifeMap
- (80) miRTarBase
- (81) MalaCards
- (82) Invitrogen
- (83) BitterDB
- (84) Vector BioLabs
- (85) ESI-BIO
- (86) RefSeq
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- (88) MaxQB
- (89) IUPHAR
- (90) BioGPS
- (91) Illumina
- (92) COMPARTMENTS
- (93) HOMER
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- (95) ApexBio
- (96) Addgene
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- (153) DataMed
- (154) HumanCyc
- (155) genomics-online
- (156) UCNEbase
- (157) EPDnew
- (158) Applied Biosystems
