Aliases for KCNIP1-OT1 Gene

Subcategory (RNA class) for KCNIP1-OT1 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for KCNIP1-OT1 Gene

  • KCNIP1 Overlapping Transcript 1 2 3
  • Novel Transcript 5
  • CTD-2270F17.1 3
  • Lnc-C5orf58-1 168
  • HSALNG0046520 167
  • AC027306.1 5
  • KCNIP1-OT1 2

External Ids for KCNIP1-OT1 Gene

Summaries for KCNIP1-OT1 Gene

GeneCards Summary for KCNIP1-OT1 Gene

KCNIP1-OT1 (KCNIP1 Overlapping Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for KCNIP1-OT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for KCNIP1-OT1 Gene

Genomics for KCNIP1-OT1 Gene

GeneHancer (GH) Regulatory Elements for KCNIP1-OT1 Gene

Promoters and enhancers for KCNIP1-OT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J170387 Promoter/Enhancer 1.3 EPDnew Ensembl ENCODE 500.7 -0.5 -547 2.7 ZNF217 CTBP1 SRF POLR2A IKZF1 DPF2 MAZ ZNF768 TBX21 SMARCA4 KCNMB1 KCNIP1-OT1 KCNIP1 ENSG00000250274
GH05J170390 Promoter 0.4 Ensembl 500.7 +1.0 1011 0.2 NR2F1 KCNMB1 KCNIP1-OT1 KCNIP1 ENSG00000253858
GH05J170273 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.1 -103.3 -103336 26 HNRNPK CTCF SIN3A USF1 SP1 GTF2E2 TEAD4 ZIC2 REST RUNX1 LCP2 KCNMB1 SLIT3 KCNIP1-OT1 C5orf58 LINC01366 lnc-C5orf58-5
GH05J170329 Promoter/Enhancer 1.5 Ensembl ENCODE dbSUPER 11.7 -57.0 -56977 5.6 ZBTB40 SIN3A USF1 SP1 GTF2E2 ZIC2 ZBTB11 AFF1 TRIM28 RELA lnc-KCNIP1-6 lnc-LCP2-7 LINC01366 LCP2 KCNIP1-OT1 KCNMB1 C5orf58 lnc-KCNIP1-5
GH05J170311 Promoter/Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 10.5 -76.8 -76777 2.1 NRF1 ATF2 NFYB CREB1 ZBTB17 CTCF MEF2B SPI1 STAT3 EBF1 ENSG00000250274 LCP2 KCNMB1 KCNIP1 KCNIP1-OT1 lnc-KCNIP1-7 LINC01366
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around KCNIP1-OT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for KCNIP1-OT1 Gene

Genomic Locations for KCNIP1-OT1 Gene
chr5:170,389,490-170,422,844
(GRCh38/hg38)
Size:
33,355 bases
Orientation:
Plus strand
chr5:169,816,497-169,849,848
(GRCh37/hg19)
Size:
33,352 bases
Orientation:
Plus strand

Genomic View for KCNIP1-OT1 Gene

Genes around KCNIP1-OT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KCNIP1-OT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KCNIP1-OT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KCNIP1-OT1 Gene

Proteins for KCNIP1-OT1 Gene

Post-translational modifications for KCNIP1-OT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KCNIP1-OT1 Gene

Domains & Families for KCNIP1-OT1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for KCNIP1-OT1 Gene

Function for KCNIP1-OT1 Gene

Phenotypes From GWAS Catalog for KCNIP1-OT1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KCNIP1-OT1 Gene

Localization for KCNIP1-OT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for KCNIP1-OT1 Gene

Pathways & Interactions for KCNIP1-OT1 Gene

PathCards logo

SuperPathways for KCNIP1-OT1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for KCNIP1-OT1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for KCNIP1-OT1 Gene

Drugs & Compounds for KCNIP1-OT1 Gene

No Compound Related Data Available

Transcripts for KCNIP1-OT1 Gene

mRNA/cDNA for KCNIP1-OT1 Gene

4 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 LncBook transcripts :
4 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for KCNIP1-OT1 Gene

No ASD Table

Relevant External Links for KCNIP1-OT1 Gene

GeneLoc Exon Structure for
KCNIP1-OT1

Expression for KCNIP1-OT1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KCNIP1-OT1 Gene

Orthologs for KCNIP1-OT1 Gene

Evolution for KCNIP1-OT1 Gene

ENSEMBL:
Gene Tree for KCNIP1-OT1 (if available)
TreeFam:
Gene Tree for KCNIP1-OT1 (if available)

No data available for Orthologs for KCNIP1-OT1 Gene

Paralogs for KCNIP1-OT1 Gene

No data available for Paralogs for KCNIP1-OT1 Gene

Variants for KCNIP1-OT1 Gene

Additional dbSNP identifiers (rs#s) for KCNIP1-OT1 Gene

Structural Variations from Database of Genomic Variants (DGV) for KCNIP1-OT1 Gene

Variant ID Type Subtype PubMed ID
esv2731068 CNV deletion 23290073
esv3570549 CNV loss 25503493
nsv462515 CNV loss 19166990
nsv471054 CNV loss 18288195
nsv600260 CNV loss 21841781

Additional Variant Information for KCNIP1-OT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KCNIP1-OT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for KCNIP1-OT1 Gene

Disorders for KCNIP1-OT1 Gene

No disorders were found for KCNIP1-OT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for KCNIP1-OT1 Gene

Publications for KCNIP1-OT1 Gene

No publications were found for KCNIP1-OT1 Gene.

No data available for Mastermind for KCNIP1-OT1 Gene

Products for KCNIP1-OT1 Gene

Sources for KCNIP1-OT1 Gene