Aliases for KCNIP1-AS1 Gene

Subcategory (RNA class) for KCNIP1-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for KCNIP1-AS1 Gene

  • KCNIP1 Antisense RNA 1 2 3
  • Novel Transcript 5
  • HSALNG0046523 167
  • NONHSAG042203 92
  • Lnc-KCNMB1-2 168
  • CTC-265N9.1 3
  • AC027312.1 5
  • KCNIP1-AS1 2

External Ids for KCNIP1-AS1 Gene

Summaries for KCNIP1-AS1 Gene

GeneCards Summary for KCNIP1-AS1 Gene

KCNIP1-AS1 (KCNIP1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for KCNIP1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for KCNIP1-AS1 Gene

Genomics for KCNIP1-AS1 Gene

GeneHancer (GH) Regulatory Elements for KCNIP1-AS1 Gene

Promoters and enhancers for KCNIP1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J170681 Promoter 0.8 Ensembl 500.7 +0.3 269 0.4 REST SAP30 HDAC2 MXI1 MIER1 EHMT2 SIN3A MNT MAX MIER2 KCNIP1-AS1 piR-58933 KCNIP1
GH05J170638 Enhancer 0.7 Ensembl ENCODE 0.3 +42.2 42170 1.4 CTCF USF1 RAD21 TRIM22 SMC3 ZNF263 ELF1 ZNF654 GLIS1 ZNF2 GABRP ENSG00000253348 KCNIP1-OT1 KCNMB1 piR-58933 KCNIP1-AS1 piR-35674-434 KCNIP1
GH05J170642 Enhancer 0.3 Ensembl 0.3 +38.7 38669 0.4 FOS GABRP ENSG00000253348 KCNIP1-OT1 KCNMB1 piR-58933 KCNIP1-AS1 piR-35674-434 KCNIP1
GH05J170686 Enhancer 0.2 Ensembl 0.4 -5.2 -5231 0.2 KCNIP1-AS1 HSALNG0046523 KCNIP1
GH05J170699 Enhancer 0.2 FANTOM5 0.4 -18.1 -18094 0 ENSG00000253858 HSALNG0046523 KCNIP1-AS1 KCNIP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around KCNIP1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for KCNIP1-AS1 Gene

Genomic Locations for KCNIP1-AS1 Gene
chr5:170,639,158-170,681,470
(GRCh38/hg38)
Size:
42,313 bases
Orientation:
Minus strand
chr5:170,066,162-170,108,441
(GRCh37/hg19)
Size:
42,280 bases
Orientation:
Minus strand

Genomic View for KCNIP1-AS1 Gene

Genes around KCNIP1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KCNIP1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KCNIP1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KCNIP1-AS1 Gene

Proteins for KCNIP1-AS1 Gene

Post-translational modifications for KCNIP1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KCNIP1-AS1 Gene

Domains & Families for KCNIP1-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for KCNIP1-AS1 Gene

Function for KCNIP1-AS1 Gene

Phenotypes From GWAS Catalog for KCNIP1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KCNIP1-AS1 Gene

Localization for KCNIP1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for KCNIP1-AS1 Gene

Pathways & Interactions for KCNIP1-AS1 Gene

PathCards logo

SuperPathways for KCNIP1-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for KCNIP1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for KCNIP1-AS1 Gene

Drugs & Compounds for KCNIP1-AS1 Gene

No Compound Related Data Available

Transcripts for KCNIP1-AS1 Gene

mRNA/cDNA for KCNIP1-AS1 Gene

6 RNACentral transcripts :
1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
2 LncBook transcripts :
3 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for KCNIP1-AS1 Gene

No ASD Table

Relevant External Links for KCNIP1-AS1 Gene

GeneLoc Exon Structure for
KCNIP1-AS1

Expression for KCNIP1-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KCNIP1-AS1 Gene

Orthologs for KCNIP1-AS1 Gene

Evolution for KCNIP1-AS1 Gene

ENSEMBL:
Gene Tree for KCNIP1-AS1 (if available)
TreeFam:
Gene Tree for KCNIP1-AS1 (if available)

No data available for Orthologs for KCNIP1-AS1 Gene

Paralogs for KCNIP1-AS1 Gene

No data available for Paralogs for KCNIP1-AS1 Gene

Variants for KCNIP1-AS1 Gene

Additional dbSNP identifiers (rs#s) for KCNIP1-AS1 Gene

Additional Variant Information for KCNIP1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KCNIP1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for KCNIP1-AS1 Gene

Disorders for KCNIP1-AS1 Gene

No disorders were found for KCNIP1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for KCNIP1-AS1 Gene

Publications for KCNIP1-AS1 Gene

No publications were found for KCNIP1-AS1 Gene.

No data available for Mastermind for KCNIP1-AS1 Gene

Products for KCNIP1-AS1 Gene

Sources for KCNIP1-AS1 Gene