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Aliases for KCNH1-IT1 Gene

Subcategory (RNA class) for KCNH1-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for KCNH1-IT1 Gene

  • KCNH1 Intronic Transcript 1 2 3 5
  • KCNH1 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for KCNH1-IT1 Gene

Previous GeneCards Identifiers for KCNH1-IT1 Gene

  • GC00U933307
  • GC01M211306

Summaries for KCNH1-IT1 Gene

GeneCards Summary for KCNH1-IT1 Gene

KCNH1-IT1 (KCNH1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for KCNH1-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KCNH1-IT1 Gene

Genomics for KCNH1-IT1 Gene

GeneHancer (GH) Regulatory Elements for KCNH1-IT1 Gene

Promoters and enhancers for KCNH1-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I211133 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 550.8 -0.8 -790 1.1 ATF1 ARNT SIN3A FEZF1 ZNF48 GLIS2 CBX5 ZNF143 ATF7 KLF13 ENSG00000284299 KCNH1 KCNH1-IT1 ENSG00000283952 ENSG00000284376
GH01I210584 Enhancer 1.2 Ensembl ENCODE dbSUPER 11.9 +548.8 548773 0.4 HDGF MEIS2 CTCF PKNOX1 NFIB BACH1 SIN3A RAD21 ZNF316 ARID2 KCNH1 KCNH1-IT1 ENSG00000279333 LOC100421537 HHAT
GH01I210406 Enhancer 1 Ensembl ENCODE 11.2 +725.9 725894 1.1 CTCF MXI1 PKNOX1 RB1 ZNF449 KLF17 ZIC2 RAD21 RFX5 ZEB1 KCNH1 KCNH1-IT1 GC01M210375 RNU5A-8P LOC100421537 HHAT
GH01I210581 Enhancer 0.6 ENCODE 12.1 +550.7 550725 1.5 MEIS2 TEAD4 CBFA2T3 ZEB2 GABPA CTBP1 NCOR1 KLF16 VEZF1 CREM KCNH1 KCNH1-IT1 ENSG00000279333 LOC100421537 HHAT
GH01I210415 Enhancer 0.3 ENCODE 12 +716.1 716081 2.6 CTCF KCNH1 KCNH1-IT1 IRF6 RNU5A-8P GC01M210375 LOC100421537 HHAT
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around KCNH1-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for KCNH1-IT1 Gene

Genomic Locations for KCNH1-IT1 Gene
chr1:211,132,588-211,133,374
(GRCh38/hg38)
Size:
787 bases
Orientation:
Minus strand
chr1:211,305,930-211,306,716
(GRCh37/hg19)

Genomic View for KCNH1-IT1 Gene

Genes around KCNH1-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KCNH1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KCNH1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for KCNH1-IT1 Gene

Proteins for KCNH1-IT1 Gene

Post-translational modifications for KCNH1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KCNH1-IT1 Gene

Domains & Families for KCNH1-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KCNH1-IT1 Gene

Function for KCNH1-IT1 Gene

Phenotypes From GWAS Catalog for KCNH1-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KCNH1-IT1 Gene

Localization for KCNH1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for KCNH1-IT1 Gene

Pathways & Interactions for KCNH1-IT1 Gene

SuperPathways for KCNH1-IT1 Gene

No Data Available

Interacting Proteins for KCNH1-IT1 Gene

Gene Ontology (GO) - Biological Process for KCNH1-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KCNH1-IT1 Gene

Drugs & Compounds for KCNH1-IT1 Gene

No Compound Related Data Available

Transcripts for KCNH1-IT1 Gene

mRNA/cDNA for KCNH1-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for KCNH1-IT1 Gene

No ASD Table

Relevant External Links for KCNH1-IT1 Gene

GeneLoc Exon Structure for
KCNH1-IT1
ECgene alternative splicing isoforms for
KCNH1-IT1

Expression for KCNH1-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for KCNH1-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for KCNH1-IT1 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x6.4), Brain - Cerebellum (x5.8), Brain - Cortex (x4.9), and Brain - Frontal Cortex (BA9) (x4.4).
genes like me logo Genes that share expression patterns with KCNH1-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KCNH1-IT1 Gene

Orthologs for KCNH1-IT1 Gene

Evolution for KCNH1-IT1 Gene

ENSEMBL:
Gene Tree for KCNH1-IT1 (if available)
TreeFam:
Gene Tree for KCNH1-IT1 (if available)

No data available for Orthologs for KCNH1-IT1 Gene

Paralogs for KCNH1-IT1 Gene

No data available for Paralogs for KCNH1-IT1 Gene

Variants for KCNH1-IT1 Gene

Additional Variant Information for KCNH1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KCNH1-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for KCNH1-IT1 Gene

Disorders for KCNH1-IT1 Gene

Additional Disease Information for KCNH1-IT1

No disorders were found for KCNH1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KCNH1-IT1 Gene

Publications for KCNH1-IT1 Gene

No publications were found for KCNH1-IT1 Gene.

Products for KCNH1-IT1 Gene

Sources for KCNH1-IT1 Gene

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