Aliases for KCNH1-IT1 Gene

Subcategory (RNA class) for KCNH1-IT1 Gene


Number of RNA Genes sources:

3 / 14

Aliases for KCNH1-IT1 Gene

  • KCNH1 Intronic Transcript 1 2 3 5
  • KCNH1 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • KCNH1-IT1 2 168
  • HSALNG0010270 167
  • NONHSAG004188 92

External Ids for KCNH1-IT1 Gene

Previous GeneCards Identifiers for KCNH1-IT1 Gene

  • GC00U933307
  • GC01M211306

Summaries for KCNH1-IT1 Gene

GeneCards Summary for KCNH1-IT1 Gene

KCNH1-IT1 (KCNH1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for KCNH1-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for KCNH1-IT1 Gene

Genomics for KCNH1-IT1 Gene

GeneHancer (GH) Regulatory Elements for KCNH1-IT1 Gene

Promoters and enhancers for KCNH1-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J211133 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 500.7 +0.1 110 2.9 HNRNPK EP300 CTCF TCF12 MYC ZIC2 ZBTB10 RBM34 ZNF423 ZBTB26 ENSG00000284299 KCNH1 KCNH1-IT1 KR153224-002 ENSG00000283952 ENSG00000284376
GH01J210584 Enhancer 1.1 Ensembl ENCODE dbSUPER 11.9 +548.6 548640 0.9 CTCF TCF12 REST RAD21 SMC3 MXI1 ZNF341 ZNF316 NFIC ZBTB17 KCNH1 KCNH1-IT1 HSALNG0010258 lnc-SERTAD4-3 HHAT
GH01J210406 Enhancer 0.9 Ensembl ENCODE 11.2 +726.0 725962 1.2 CTCF ZSCAN5C ZIC2 REST RAD21 TRIM22 ZEB1 SMC3 DEK ZBTB17 KCNH1 KCNH1-IT1 ENSG00000287157 lnc-KCNH1-6 LOC100421537 HHAT
GH01J210581 Enhancer 0.8 Ensembl ENCODE 12.1 +550.7 550726 1.5 HES1 CTBP1 GABPA NCOR1 TAL1 NR2F1 GATA2 VEZF1 NR2F6 MEIS2 KCNH1 KCNH1-IT1 HSALNG0010258 lnc-SERTAD4-3 HHAT
GH01J210415 Enhancer 0.6 Ensembl ENCODE 12 +716.1 716082 2.6 HDAC2 CTCF RAD21 KCNH1 KCNH1-IT1 IRF6 ENSG00000287157 LOC100421537 lnc-KCNH1-6 HHAT
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around KCNH1-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for KCNH1-IT1 Gene

Genomic Locations for KCNH1-IT1 Gene
1,097 bases
Minus strand
787 bases
Minus strand

Genomic View for KCNH1-IT1 Gene

Genes around KCNH1-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KCNH1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KCNH1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KCNH1-IT1 Gene

Proteins for KCNH1-IT1 Gene

Post-translational modifications for KCNH1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KCNH1-IT1 Gene

Domains & Families for KCNH1-IT1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for KCNH1-IT1 Gene

Function for KCNH1-IT1 Gene

Phenotypes From GWAS Catalog for KCNH1-IT1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KCNH1-IT1 Gene

Localization for KCNH1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for KCNH1-IT1 Gene

Pathways & Interactions for KCNH1-IT1 Gene

PathCards logo

SuperPathways for KCNH1-IT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for KCNH1-IT1 Gene


No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for KCNH1-IT1 Gene

Drugs & Compounds for KCNH1-IT1 Gene

No Compound Related Data Available

Transcripts for KCNH1-IT1 Gene

mRNA/cDNA for KCNH1-IT1 Gene

3 RNACentral transcripts :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
2 LncBook transcripts :
1 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for KCNH1-IT1 Gene

No ASD Table

Relevant External Links for KCNH1-IT1 Gene

GeneLoc Exon Structure for

Expression for KCNH1-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for KCNH1-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for KCNH1-IT1 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x6.4), Brain - Cerebellum (x5.8), Brain - Cortex (x4.9), and Brain - Frontal Cortex (BA9) (x4.4).
genes like me logo Genes that share expression patterns with KCNH1-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KCNH1-IT1 Gene

Orthologs for KCNH1-IT1 Gene

Evolution for KCNH1-IT1 Gene

Gene Tree for KCNH1-IT1 (if available)
Gene Tree for KCNH1-IT1 (if available)

No data available for Orthologs for KCNH1-IT1 Gene

Paralogs for KCNH1-IT1 Gene

No data available for Paralogs for KCNH1-IT1 Gene

Variants for KCNH1-IT1 Gene

Additional dbSNP identifiers (rs#s) for KCNH1-IT1 Gene

Additional Variant Information for KCNH1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for KCNH1-IT1 Gene

Disorders for KCNH1-IT1 Gene

Additional Disease Information for KCNH1-IT1

No disorders were found for KCNH1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KCNH1-IT1 Gene

Publications for KCNH1-IT1 Gene

No publications were found for KCNH1-IT1 Gene.

No data available for Mastermind for KCNH1-IT1 Gene

Products for KCNH1-IT1 Gene

Sources for KCNH1-IT1 Gene