Aliases for KCND3-IT1 Gene

Subcategory (RNA class) for KCND3-IT1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for KCND3-IT1 Gene

  • KCND3 Intronic Transcript 1 2 3 5
  • KCND3-IT1 2 5 165
  • KCND3 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • NONHSAG002423.2 91
  • HSALNG0006077 164

External Ids for KCND3-IT1 Gene

Previous GeneCards Identifiers for KCND3-IT1 Gene

  • GC00U933371
  • GC01M112397

Summaries for KCND3-IT1 Gene

GeneCards Summary for KCND3-IT1 Gene

KCND3-IT1 (KCND3 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for KCND3-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for KCND3-IT1 Gene

Genomics for KCND3-IT1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for KCND3-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J111856 Enhancer 0.4 Ensembl 600.7 -0.1 -95 1.2 MAFK HSF1 EZH2 KCND3-IT1 KCND3-AS1 KCND3 LINC01750 CEPT1 piR-33810 INKA2
GH01J111855 Enhancer 0.3 Ensembl 600.7 +1.6 1605 0.6 ESRRA EZH2 KCND3-IT1 KCND3-AS1 KCND3 LINC01750 5MWI_A-007 INKA2
GH01J111851 Enhancer 0.6 Ensembl 0.7 +4.4 4405 2.6 GTF2F1 CTBP1 ZNF316 ESRRA HCFC1 POLR2A NONO FOXA1 NCOA3 RFX5 KCND3 KCND3-IT1 5MWI_A-007 INKA2
GH01J111878 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 -22.0 -21991 1.8 GTF2F1 CTBP1 ESRRA ZNF8 NR2F1 DPF2 KLF17 FOXA1 RFX5 HNF4A KCND3-AS1 piR-33810 KCND3-IT1 KCND3 INKA2
GH01J111880 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 -24.6 -24595 3.4 SP1 ZNF512B NR2F2 SIN3A POLR2A HNF4A RXRA HSF1 EZH2 SREBF1 KCND3-AS1 piR-33810 KCND3-IT1 KCND3 INKA2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around KCND3-IT1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for KCND3-IT1 Gene

Genomic Locations for KCND3-IT1 Gene
chr1:111,853,762-111,856,906
(GRCh38/hg38)
Size:
3,145 bases
Orientation:
Minus strand
chr1:112,396,384-112,399,527
(GRCh37/hg19)
Size:
3,144 bases
Orientation:
Minus strand

Genomic View for KCND3-IT1 Gene

Genes around KCND3-IT1 on UCSC Golden Path with GeneCards custom track
KCND3-IT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
KCND3-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KCND3-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KCND3-IT1 Gene

Proteins for KCND3-IT1 Gene

Post-translational modifications for KCND3-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KCND3-IT1 Gene

Domains & Families for KCND3-IT1 Gene

Gene Families for KCND3-IT1 Gene

genes like me logo Genes that share domains with KCND3-IT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for KCND3-IT1 Gene

Function for KCND3-IT1 Gene

Phenotypes From GWAS Catalog for KCND3-IT1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KCND3-IT1 Gene

Localization for KCND3-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for KCND3-IT1 Gene

Pathways & Interactions for KCND3-IT1 Gene

PathCards logo

SuperPathways for KCND3-IT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for KCND3-IT1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for KCND3-IT1 Gene

Drugs & Compounds for KCND3-IT1 Gene

No Compound Related Data Available

Transcripts for KCND3-IT1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for KCND3-IT1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000185D44_9606 lncRNA 376 5

HGNC: 41350,

RefSeq: NR_046783,

Ensembl: ENST00000439736 (view in UCSC) ,

LNCipedia: KCND3-IT1:1,

NONCODE: NONHSAT005208.2,

URS00009C4E01_9606 lncRNA 376 2

LncBook: HSALNT0012705,

NONCODE: NONHSAT152096.1,

KCND3-IT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for KCND3-IT1 Gene

1 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for KCND3-IT1 Gene

No ASD Table

Relevant External Links for KCND3-IT1 Gene

GeneLoc Exon Structure for
KCND3-IT1

Expression for KCND3-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for KCND3-IT1 Gene

genes like me logo Genes that share expression patterns with KCND3-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KCND3-IT1 Gene

Orthologs for KCND3-IT1 Gene

Evolution for KCND3-IT1 Gene

ENSEMBL:
Gene Tree for KCND3-IT1 (if available)
TreeFam:
Gene Tree for KCND3-IT1 (if available)

No data available for Orthologs for KCND3-IT1 Gene

Paralogs for KCND3-IT1 Gene

No data available for Paralogs for KCND3-IT1 Gene

Variants for KCND3-IT1 Gene

Additional dbSNP identifiers (rs#s) for KCND3-IT1 Gene

Additional Variant Information for KCND3-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KCND3-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for KCND3-IT1 Gene

Disorders for KCND3-IT1 Gene

No disorders were found for KCND3-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KCND3-IT1 Gene

Publications for KCND3-IT1 Gene

No publications were found for KCND3-IT1 Gene.

No data available for Mastermind for KCND3-IT1 Gene

Products for KCND3-IT1 Gene

Sources for KCND3-IT1 Gene