Aliases for KAZN-AS1 Gene

Subcategory (RNA class) for KAZN-AS1 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for KAZN-AS1 Gene

  • KAZN Antisense RNA 1 2 3 5
  • KAZN-AS1 2 170
  • NONHSAG000422 94
  • NONHSAG000424 94
  • HSALNG0001020 169

External Ids for KAZN-AS1 Gene

Summaries for KAZN-AS1 Gene

GeneCards Summary for KAZN-AS1 Gene

KAZN-AS1 (KAZN Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for KAZN-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for KAZN-AS1 Gene

Genomics for KAZN-AS1 Gene

GeneHancer (GH) Regulatory Elements for KAZN-AS1 Gene

Promoters and enhancers for KAZN-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J014415 Enhancer 0.5 Ensembl 0.6 +4.2 4173 0.4 REST ZNF37A SCRT2 CTCF ZNF143 PRDM10 TMEM51-AS1 KAZN-AS1 piR-46568 piR-46002-001 KAZN
GH01J014403 Enhancer 0.7 Ensembl ENCODE 0.4 +15.1 15095 2.2 SP1 RFX1 POLR2A ZNF316 BMI1 EMSY piR-46002-001 piR-46568 KAZN-AS1 KAZN
GH01J014371 Enhancer 0.6 Ensembl ENCODE 0.2 +47.8 47772 2 USF1 CUX1 FOXA1 FOS piR-31367 piR-48260 KAZN-AS1 KAZN
GH01J014345 Enhancer 0.7 Ensembl dbSUPER 0.2 +73.7 73672 0.6 SMARCA4 CREB1 JUND CTBP1 NR2C2 FOSL1 FOS JUN ZEB2 KDM1A piR-31534-010 lnc-PRDM2-3 KAZN-AS1 KAZN
GH01J014365 Enhancer 0.6 ENCODE CraniofacialAtlas 0.2 +53.8 53834 1.7 ZNF652 POLR2A CTCF piR-46826 piR-59297-007 KAZN-AS1 KAZN
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around KAZN-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for KAZN-AS1 Gene

Genomic Locations for KAZN-AS1 Gene
chr1:14,338,825-14,419,973
(GRCh38/hg38)
Size:
81,149 bases
Orientation:
Minus strand
chr1:14,675,450-14,677,518
(GRCh37/hg19)
Size:
2,069 bases
Orientation:
Minus strand

Genomic View for KAZN-AS1 Gene

Genes around KAZN-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KAZN-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KAZN-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KAZN-AS1 Gene

Proteins for KAZN-AS1 Gene

Post-translational modifications for KAZN-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KAZN-AS1 Gene

Domains & Families for KAZN-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for KAZN-AS1 Gene

Function for KAZN-AS1 Gene

Phenotypes From GWAS Catalog for KAZN-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KAZN-AS1 Gene

Localization for KAZN-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for KAZN-AS1 Gene

Pathways & Interactions for KAZN-AS1 Gene

PathCards logo

SuperPathways for KAZN-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for KAZN-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KAZN-AS1 Gene

Drugs & Compounds for KAZN-AS1 Gene

No Compound Related Data Available

Transcripts for KAZN-AS1 Gene

mRNA/cDNA for KAZN-AS1 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(7) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(10) RNACentral transcripts :
(7) NONCODE transcripts :
(7) LncBook transcripts :
(5) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for KAZN-AS1 Gene

No ASD Table

Relevant External Links for KAZN-AS1 Gene

GeneLoc Exon Structure for
KAZN-AS1
ECgene alternative splicing isoforms for
KAZN-AS1

Expression for KAZN-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KAZN-AS1 Gene

Orthologs for KAZN-AS1 Gene

Evolution for KAZN-AS1 Gene

ENSEMBL:
Gene Tree for KAZN-AS1 (if available)
TreeFam:
Gene Tree for KAZN-AS1 (if available)

No data available for Orthologs for KAZN-AS1 Gene

Paralogs for KAZN-AS1 Gene

No data available for Paralogs for KAZN-AS1 Gene

Variants for KAZN-AS1 Gene

Sequence variations from dbSNP and Humsavar for KAZN-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000067823 -- 14,399,503(-) G/A/C intron_variant
rs1000174242 -- 14,406,917(-) A/T intron_variant
rs1000179841 -- 14,354,476(-) A/G intron_variant
rs1000212733 -- 14,390,443(-) G/C intron_variant
rs1000232897 -- 14,364,480(-) A/G intron_variant

Additional Variant Information for KAZN-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KAZN-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for KAZN-AS1 Gene

Disorders for KAZN-AS1 Gene

Additional Disease Information for KAZN-AS1

No disorders were found for KAZN-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KAZN-AS1 Gene

Publications for KAZN-AS1 Gene

  1. Comprehensive transcriptome analysis identifies novel molecular subtypes and subtype-specific RNAs of triple-negative breast cancer. (PMID: 26975198) Liu YR … Shao ZM (Breast cancer research : BCR 2016) 2 3 56
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56
  3. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3 56

Products for KAZN-AS1 Gene

Sources for KAZN-AS1 Gene