Aliases for KANSL1-AS1 Gene

Data sources for KANSL1-AS1 Gene:

RNA type for KANSL1-AS1 Gene

lncRNA

Aliases for KANSL1-AS1 Gene

External Ids for KANSL1-AS1 Gene

Previous GeneCards Identifiers for KANSL1-AS1 Gene

  • GC17P044271

Summaries for KANSL1-AS1 Gene

GeneCards Summary for KANSL1-AS1 Gene

KANSL1-AS1 (KANSL1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for KANSL1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for KANSL1-AS1 Gene

Genomics for KANSL1-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for KANSL1-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around KANSL1-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for KANSL1-AS1 Gene

Latest Assembly
chr17:46,193,572-46,196,723
(GRCh38/hg38)
Size:
3,152 bases
Orientation:
Plus strand

Previous Assembly
chr17:44,270,939-44,274,089
(GRCh37/hg19 by Entrez Gene)
Size:
3,151 bases
Orientation:
Plus strand

chr17:44,270,942-44,274,089
(GRCh37/hg19 by Ensembl)
Size:
3,148 bases
Orientation:
Plus strand

Alternative Locations (GRCh38/hg38)

  • chr17(ALT_REF_LOCI_1):590,243-593,393 (-)
  • chr17(ALT_REF_LOCI_2):895,677-898,827 (+)

Genomic View for KANSL1-AS1 Gene

Genes around KANSL1-AS1 on UCSC Golden Path with GeneCards custom track
KANSL1-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
KANSL1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KANSL1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KANSL1-AS1 Gene

Proteins for KANSL1-AS1 Gene

Post-translational modifications for KANSL1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KANSL1-AS1 Gene

Domains & Families for KANSL1-AS1 Gene

Gene Families for KANSL1-AS1 Gene

Suggested Antigen Peptide Sequences for KANSL1-AS1 Gene

GenScript: Design optimal peptide antigens:
  • LOC644246 protein (Q8WW58_HUMAN)
genes like me logo Genes that share domains with KANSL1-AS1: view

No data available for Protein Domains , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for KANSL1-AS1 Gene

Function for KANSL1-AS1 Gene

Phenotypes From GWAS Catalog for KANSL1-AS1 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KANSL1-AS1 Gene

Localization for KANSL1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for KANSL1-AS1 Gene

Pathways & Interactions for KANSL1-AS1 Gene

PathCards logo

SuperPathways for KANSL1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for KANSL1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for KANSL1-AS1 Gene

Drugs & Compounds for KANSL1-AS1 Gene

No Compound Related Data Available

Transcripts for KANSL1-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for KANSL1-AS1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000025441_9606 lncRNA 424 4

Ensembl: ENST00000572973 (view in UCSC) ,

LncBook: HSALNT0241567,

LNCipedia: KANSL1-AS1:4,

NONCODE: NONHSAT054204.2,

URS000052D5CE_9606 lncRNA 666 3

Ensembl: ENST00000572634 (view in UCSC) ,

LNCipedia: KANSL1-AS1:5,

NONCODE: NONHSAT054205.2,

URS0000489071_9606 lncRNA 517 3

Ensembl: ENST00000398275 (view in UCSC) ,

LncBook: HSALNT0241562,

LNCipedia: KANSL1-AS1:2,

URS000075ED2D_9606 lncRNA 522 1

RefSeq: NR_034172,

URS00008B8A8F_9606 lncRNA 524 3

LncBook: HSALNT0241558, HSALNT0241559, HSALNT0241561,

LNCipedia: KANSL1-AS1:1,

NONCODE: NONHSAT054203.2, NONHSAT056792.2,

KANSL1-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for KANSL1-AS1 Gene

5 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for KANSL1-AS1 Gene

No ASD Table

Relevant External Links for KANSL1-AS1 Gene

GeneLoc Exon Structure for
KANSL1-AS1

Expression for KANSL1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for KANSL1-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for KANSL1-AS1

SOURCE GeneReport for Unigene cluster for KANSL1-AS1 Gene:

Hs.644600
genes like me logo Genes that share expression patterns with KANSL1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KANSL1-AS1 Gene

Orthologs for KANSL1-AS1 Gene

Evolution for KANSL1-AS1 Gene

ENSEMBL:
Gene Tree for KANSL1-AS1 (if available)
TreeFam:
Gene Tree for KANSL1-AS1 (if available)
Alliance of Genome Resources:
Additional Orthologs for KANSL1-AS1

No data available for Orthologs for KANSL1-AS1 Gene

Paralogs for KANSL1-AS1 Gene

No data available for Paralogs for KANSL1-AS1 Gene

Variants for KANSL1-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for KANSL1-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for KANSL1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv127e55 CNV gain 17911159
dgv128e55 CNV gain 17911159
dgv129e55 CNV loss 17911159
dgv130e55 CNV gain 17911159
dgv131e55 CNV loss 17911159
dgv1765e59 CNV duplication 20981092
dgv25n64 CNV gain 17921354
dgv3180n100 CNV gain 25217958
dgv3181n100 CNV gain 25217958
dgv3182n100 CNV gain 25217958
dgv3184n100 CNV gain 25217958
dgv3185n100 CNV gain 25217958
dgv3188n100 CNV gain 25217958
dgv3189n100 CNV gain 25217958
dgv3190n100 CNV gain 25217958
dgv3192n100 CNV loss 25217958
dgv3194n100 CNV loss 25217958
dgv3195n100 CNV gain+loss 25217958
dgv3196n100 CNV gain+loss 25217958
dgv3198n100 CNV loss 25217958
dgv3199n100 CNV loss 25217958
dgv3200n100 CNV loss 25217958
dgv3201n100 CNV gain 25217958
dgv3202n100 CNV gain 25217958
dgv3203n100 CNV gain+loss 25217958
dgv3204n100 CNV gain 25217958
dgv3206n100 CNV loss 25217958
dgv3207n100 CNV loss 25217958
dgv3208n100 CNV loss 25217958
dgv3209n100 CNV gain 25217958
dgv3210n100 CNV loss 25217958
dgv3213n100 CNV gain+loss 25217958
dgv3214n100 CNV gain+loss 25217958
dgv3216n100 CNV loss 25217958
dgv3217n100 CNV loss 25217958
dgv3219n100 CNV gain 25217958
dgv3221n100 CNV gain+loss 25217958
dgv3222n100 CNV loss 25217958
dgv3229n100 CNV loss 25217958
dgv3230n100 CNV loss 25217958
dgv3231n100 CNV gain 25217958
dgv3232n100 CNV loss 25217958
dgv3233n100 CNV gain 25217958
dgv3234n100 CNV gain+loss 25217958
dgv3235n100 CNV loss 25217958
dgv3236n100 CNV loss 25217958
dgv3237n100 CNV loss 25217958
dgv3238n100 CNV gain 25217958
dgv3239n100 CNV gain 25217958
dgv3240n100 CNV gain 25217958
dgv3241n100 CNV loss 25217958
dgv3242n100 CNV gain+loss 25217958
dgv366n27 CNV gain 19166990
dgv367n27 CNV gain 19166990
dgv5617n54 CNV gain 21841781
dgv5618n54 CNV gain 21841781
dgv5619n54 CNV gain+loss 21841781
dgv5620n54 CNV gain 21841781
dgv5621n54 CNV gain+loss 21841781
dgv5622n54 CNV loss 21841781
dgv5623n54 CNV loss 21841781
dgv5624n54 CNV loss 21841781
dgv5625n54 CNV loss 21841781
dgv5627n54 CNV loss 21841781
dgv5628n54 CNV loss 21841781
dgv5630n54 CNV gain 21841781
dgv5631n54 CNV loss 21841781
dgv5633n54 CNV loss 21841781
dgv5634n54 CNV loss 21841781
dgv5635n54 CNV loss 21841781
dgv5636n54 CNV loss 21841781
dgv5637n54 CNV gain 21841781
dgv5638n54 CNV gain 21841781
dgv5639n54 CNV gain 21841781
dgv5640n54 CNV loss 21841781
dgv938e212 CNV gain 25503493
dgv939e212 CNV gain 25503493
dgv940e212 CNV loss 25503493
dgv941e212 CNV loss 25503493
dgv943e212 CNV gain 25503493
dgv945e212 CNV loss 25503493
esv21783 CNV gain+loss 19812545
esv2422002 CNV duplication 20811451
esv2751686 CNV gain 17911159
esv2758692 CNV gain+loss 17122850
esv2760451 CNV gain+loss 21179565
esv2762433 CNV gain+loss 21179565
esv29951 CNV gain 18421352
esv29962 CNV loss 17803354
esv33048 CNV gain+loss 17666407
esv3352396 CNV duplication 20981092
esv3400637 CNV duplication 20981092
esv3573565 CNV gain 25503493
esv3582747 CNV loss 25503493
esv3584940 CNV gain 24956385
esv3893022 CNV gain 25118596
nsv1057963 CNV gain 25217958
nsv1060392 CNV gain+loss 25217958
nsv1063349 CNV gain 25217958
nsv1072740 CNV deletion 25765185
nsv1133407 CNV deletion 24896259
nsv1146669 OTHER inversion 26484159
nsv1160492 CNV duplication 26073780
nsv433449 CNV gain 18776910
nsv442748 CNV gain 18776908
nsv457748 CNV loss 19166990
nsv469697 CNV gain+loss 16826518
nsv470589 CNV gain 18288195
nsv471492 CNV gain 19718026
nsv471698 CNV gain+loss 15918152
nsv514850 CNV gain 21397061
nsv516807 CNV gain+loss 19592680
nsv575225 CNV loss 21841781
nsv575228 CNV gain 21841781
nsv575241 CNV gain 21841781
nsv575246 CNV gain+loss 21841781
nsv575247 CNV loss 21841781
nsv821687 CNV gain 15273396
nsv833461 CNV gain 17160897
nsv833462 CNV gain 17160897
nsv953910 CNV duplication 24416366
nsv9564 CNV gain+loss 18304495

Additional Variant Information for KANSL1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KANSL1-AS1
Leiden Open Variation Database (LOVD)
KANSL1-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for KANSL1-AS1 Gene

Disorders for KANSL1-AS1 Gene

Additional Disease Information for KANSL1-AS1

No disorders were found for KANSL1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KANSL1-AS1 Gene

Publications for KANSL1-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3

Products for KANSL1-AS1 Gene

Sources for KANSL1-AS1 Gene