Aliases for JMJD1C-AS1 Gene

Subcategory (RNA class) for JMJD1C-AS1 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for JMJD1C-AS1 Gene

  • JMJD1C Antisense RNA 1 2 3 5
  • JMJD1C-AS1 2 5
  • NONHSAG006015.2 91
  • HSALNG0078365 164

External Ids for JMJD1C-AS1 Gene

Previous GeneCards Identifiers for JMJD1C-AS1 Gene

  • GC10P065226

Summaries for JMJD1C-AS1 Gene

GeneCards Summary for JMJD1C-AS1 Gene

JMJD1C-AS1 (JMJD1C Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with JMJD1C-AS1 include Early Myoclonic Encephalopathy.

Additional gene information for JMJD1C-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for JMJD1C-AS1 Gene

Genomics for JMJD1C-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for JMJD1C-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J063463 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas 610.7 +0.3 340 3.9 ARHGAP35 HNRNPL PRDM10 ZNF629 LEF1 IKZF1 ZNF692 POLR2A ZNF174 BACH1 REEP3 JMJD1C-AS1 NRBF2 MRPL35P2 ENSG00000224412 JMJD1C
GH10J063260 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 21.8 -199.5 -199464 11.1 CREB1 GATAD2A PRDM10 ZNF629 REST TFE3 ZNF512 RFX1 LEF1 IKZF1 JMJD1C DBF4P1 JMJD1C-AS1 MRPL35P2 RPL7AP50 NRBF2 lnc-EGR2-6 piR-52079-028 REEP3
GH10J063519 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas 11.6 +56.7 56658 5.2 RNF2 CREB1 HNRNPL ATF7 PRDM10 ZNF629 TFE3 LEF1 IKZF1 POLR2A JMJD1C REEP3 NONHSAG006016.2 JMJD1C-AS1 DBF4P1 NRBF2
GH10J063235 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 10.8 -228.4 -228380 3.2 ZNF629 LEF1 IKZF1 JUND FOXA1 TCF12 IKZF2 BRD9 TRIM22 DPF2 JMJD1C-AS1 NRBF2 REEP3 lnc-NRBF2-2 lnc-EGR2-5 lnc-EGR2-6 JMJD1C
GH10J063205 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 10.2 -256.8 -256815 5.8 REST PRDM1 TCF12 IKZF2 POLR2A TRIM22 PKNOX1 EED ARID3A DPF2 JMJD1C-AS1 RF00017-674 piR-38580-036 NRBF2 JMJD1C REEP3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around JMJD1C-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for JMJD1C-AS1 Gene

Genomic Locations for JMJD1C-AS1 Gene
chr10:63,465,228-63,466,563
(GRCh38/hg38)
Size:
1,336 bases
Orientation:
Plus strand
chr10:65,224,989-65,226,323
(GRCh37/hg19)
Size:
1,335 bases
Orientation:
Plus strand

Genomic View for JMJD1C-AS1 Gene

Genes around JMJD1C-AS1 on UCSC Golden Path with GeneCards custom track
JMJD1C-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
JMJD1C-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for JMJD1C-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for JMJD1C-AS1 Gene

Proteins for JMJD1C-AS1 Gene

Post-translational modifications for JMJD1C-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for JMJD1C-AS1 Gene

Domains & Families for JMJD1C-AS1 Gene

Gene Families for JMJD1C-AS1 Gene

genes like me logo Genes that share domains with JMJD1C-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for JMJD1C-AS1 Gene

Function for JMJD1C-AS1 Gene

Phenotypes From GWAS Catalog for JMJD1C-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for JMJD1C-AS1 Gene

Localization for JMJD1C-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for JMJD1C-AS1 Gene

Pathways & Interactions for JMJD1C-AS1 Gene

PathCards logo

SuperPathways for JMJD1C-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for JMJD1C-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for JMJD1C-AS1 Gene

Drugs & Compounds for JMJD1C-AS1 Gene

No Compound Related Data Available

Transcripts for JMJD1C-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for JMJD1C-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000142677_9606 lncRNA 1335 3

HGNC: 28222,

RefSeq: NR_027182,

Ensembl: ENST00000609436 (view in UCSC) ,

URS0000EB037E_9606 lncRNA 1335 1

LncBook: HSALNT0289459,

URS00008BBA1A_9606 lncRNA 1334 1

NONCODE: NONHSAT013605.2,

JMJD1C-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for JMJD1C-AS1 Gene

1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for JMJD1C-AS1 Gene

No ASD Table

Relevant External Links for JMJD1C-AS1 Gene

GeneLoc Exon Structure for
JMJD1C-AS1

Expression for JMJD1C-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for JMJD1C-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for JMJD1C-AS1

SOURCE GeneReport for Unigene cluster for JMJD1C-AS1 Gene:

Hs.659950
genes like me logo Genes that share expression patterns with JMJD1C-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for JMJD1C-AS1 Gene

Orthologs for JMJD1C-AS1 Gene

Evolution for JMJD1C-AS1 Gene

ENSEMBL:
Gene Tree for JMJD1C-AS1 (if available)
TreeFam:
Gene Tree for JMJD1C-AS1 (if available)

No data available for Orthologs for JMJD1C-AS1 Gene

Paralogs for JMJD1C-AS1 Gene

No data available for Paralogs for JMJD1C-AS1 Gene

Variants for JMJD1C-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for JMJD1C-AS1 Gene

SNP ID Clinical significance and condition Chr 10 pos Variation AA Info Type
662424 Uncertain Significance: Early myoclonic encephalopathy 63,465,592(+) C/A MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT,INTRON_VARIANT
707342 Likely Benign: Early myoclonic encephalopathy 63,465,618(+) C/G NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT,INTRON_VARIANT
725210 Likely Benign: Early myoclonic encephalopathy 63,465,484(+) GAC/CGT NON_CODING_TRANSCRIPT_VARIANT,INTRON_VARIANT
744436 Likely Benign: not provided 63,465,645(+) C/G NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT,INTRON_VARIANT
747234 Likely Benign: Early myoclonic encephalopathy 63,465,486(+) C/T NON_CODING_TRANSCRIPT_VARIANT,INTRON_VARIANT

Additional dbSNP identifiers (rs#s) for JMJD1C-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for JMJD1C-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2677353 CNV deletion 23128226

Additional Variant Information for JMJD1C-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
JMJD1C-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for JMJD1C-AS1 Gene

Disorders for JMJD1C-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for JMJD1C-AS1 Gene - From: GeneCards

Disorder Aliases PubMed IDs
early myoclonic encephalopathy
  • epileptic seizures - myoclonic
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with JMJD1C-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for JMJD1C-AS1 Gene

Publications for JMJD1C-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3

Products for JMJD1C-AS1 Gene

Sources for JMJD1C-AS1 Gene