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Aliases for JMJD1C-AS1 Gene

Subcategory (RNA class) for JMJD1C-AS1 Gene


Quality Score for this RNA gene is


Aliases for JMJD1C-AS1 Gene

  • JMJD1C Antisense RNA 1 2 3 5

External Ids for JMJD1C-AS1 Gene

ORGUL Members for JMJD1C-AS1 Gene

Previous GeneCards Identifiers for JMJD1C-AS1 Gene

  • GC10P065226

Summaries for JMJD1C-AS1 Gene

GeneCards Summary for JMJD1C-AS1 Gene

JMJD1C-AS1 (JMJD1C Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

Additional gene information for JMJD1C-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for JMJD1C-AS1 Gene

Genomics for JMJD1C-AS1 Gene

GeneHancer (GH) Regulatory Elements for JMJD1C-AS1 Gene

Promoters and enhancers for JMJD1C-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I063463 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE 560.8 +0.5 509 3.6 PKNOX1 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B POLR2B ZNF766 CBX5 JMJD1C-AS1 JMJD1C REEP3 NRBF2 MRPL35P2 ENSG00000224412
GH10I063519 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE 11.6 +56.7 56657 5.2 HDGF PKNOX1 FOXA2 ARNT SIN3A DMAP1 ZNF2 ZNF766 CBX5 ZNF213 JMJD1C REEP3 JMJD1C-AS1 DBF4P1 NRBF2 GC10P063512 GC10M063572
GH10I063264 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 10.9 -197.4 -197427 7 FEZF1 DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF143 SP3 MEF2D ZNF610 JMJD1C DBF4P1 RPL7AP50 JMJD1C-AS1 NRBF2 MRPL35P2 GC10M063245 GC10P063350
GH10I063272 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 11 -191.1 -191056 2.4 SRF FOXA2 RFX1 YY1 FOXA1 ZNF121 JUND PRDM6 PRDM10 HNF4A JMJD1C-AS1 MRPL35P2 JMJD1C NRBF2 GC10M063245 GC10P063350
GH10I063235 Enhancer 1.3 Ensembl ENCODE dbSUPER 10.8 -228.4 -228398 3.3 ATF1 SMAD1 ARNT GTF3C2 ZNF121 ZNF766 ATF7 FOS RUNX3 RXRA JMJD1C-AS1 NRBF2 REEP3 GC10M063245 GC10P063223 JMJD1C
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around JMJD1C-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for JMJD1C-AS1 Gene

Genomic Locations for JMJD1C-AS1 Gene
1,335 bases
Plus strand

Genomic View for JMJD1C-AS1 Gene

Genes around JMJD1C-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
JMJD1C-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for JMJD1C-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for JMJD1C-AS1 Gene

Proteins for JMJD1C-AS1 Gene

Post-translational modifications for JMJD1C-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for JMJD1C-AS1 Gene

Domains & Families for JMJD1C-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for JMJD1C-AS1 Gene

Function for JMJD1C-AS1 Gene

Phenotypes From GWAS Catalog for JMJD1C-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for JMJD1C-AS1 Gene

Localization for JMJD1C-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for JMJD1C-AS1 Gene

Pathways & Interactions for JMJD1C-AS1 Gene

SuperPathways for JMJD1C-AS1 Gene

No Data Available

Interacting Proteins for JMJD1C-AS1 Gene

Gene Ontology (GO) - Biological Process for JMJD1C-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for JMJD1C-AS1 Gene

Drugs & Compounds for JMJD1C-AS1 Gene

No Compound Related Data Available

Transcripts for JMJD1C-AS1 Gene

mRNA/cDNA for JMJD1C-AS1 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for JMJD1C-AS1 Gene

JMJD1C antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for JMJD1C-AS1 Gene

No ASD Table

Relevant External Links for JMJD1C-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for JMJD1C-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for JMJD1C-AS1 Gene

SOURCE GeneReport for Unigene cluster for JMJD1C-AS1 Gene:

genes like me logo Genes that share expression patterns with JMJD1C-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for JMJD1C-AS1 Gene

Orthologs for JMJD1C-AS1 Gene

Evolution for JMJD1C-AS1 Gene

Gene Tree for JMJD1C-AS1 (if available)
Gene Tree for JMJD1C-AS1 (if available)

No data available for Orthologs for JMJD1C-AS1 Gene

Paralogs for JMJD1C-AS1 Gene

No data available for Paralogs for JMJD1C-AS1 Gene

Variants for JMJD1C-AS1 Gene

Sequence variations from dbSNP and Humsavar for JMJD1C-AS1 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs201112543 likely-benign, Early myoclonic encephalopathy 63,465,607(+) A/T non_coding_transcript_variant
rs34353506 benign, Early myoclonic encephalopathy 63,465,484(+) GA/CG non_coding_transcript_variant
rs756992665 likely-benign, Early myoclonic encephalopathy 63,465,618(+) C/G/T non_coding_transcript_variant
rs1000221619 -- 63,464,240(+) G/C upstream_transcript_variant
rs1003480420 -- 63,466,007(+) C/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for JMJD1C-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2677353 CNV deletion 23128226

Additional Variant Information for JMJD1C-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for JMJD1C-AS1 Gene

Disorders for JMJD1C-AS1 Gene

Additional Disease Information for JMJD1C-AS1

No disorders were found for JMJD1C-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for JMJD1C-AS1 Gene

Publications for JMJD1C-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58

Products for JMJD1C-AS1 Gene

Sources for JMJD1C-AS1 Gene

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