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Aliases for JHDM1D-AS1 Gene

Subcategory (RNA class) for JHDM1D-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for JHDM1D-AS1 Gene

  • JHDM1D Antisense RNA 1 (Head To Head) 2 3 5

External Ids for JHDM1D-AS1 Gene

Previous GeneCards Identifiers for JHDM1D-AS1 Gene

  • GC07P139879

Summaries for JHDM1D-AS1 Gene

GeneCards Summary for JHDM1D-AS1 Gene

JHDM1D-AS1 (JHDM1D Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for JHDM1D-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for JHDM1D-AS1 Gene

Genomics for JHDM1D-AS1 Gene

GeneHancer (GH) Regulatory Elements for JHDM1D-AS1 Gene

Promoters and enhancers for JHDM1D-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I140174 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 550.8 -0.8 -774 3.4 FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 ZFP41 GLIS1 KDM7A GC07P140176 JHDM1D-AS1 UBN2 SLC37A3 PARP12 TBXAS1 ENSG00000251728 GC07M140095
GH07I140223 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 11.1 +46.7 46720 0.6 HDGF HDAC1 ATF1 ARNT TCF12 CBX5 GATA2 EGR1 ATF7 CREM KDM7A JHDM1D-AS1 GC07P140221 RNU1-58P
GH07I140229 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 5.8 +54.6 54576 5.7 PKNOX1 FOXA2 MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1 IRF4 SLC30A9 KDM7A RNU6-797P JHDM1D-AS1 TBXAS1 RAB19 GC07P140221 RNU1-58P
GH07I140209 Enhancer 1.6 VISTA Ensembl ENCODE dbSUPER 5.9 +35.2 35181 5.3 PKNOX1 BMI1 BATF IRF4 ZNF143 ATF7 ETV6 FOS BCLAF1 IKZF2 KDM7A JHDM1D-AS1 GC07M140210 RNU6-797P GC07P140221
GH07I140165 Enhancer 1.4 FANTOM5 Ensembl ENCODE 6 -11.7 -11730 1 HDAC1 PKNOX1 ZNF76 FEZF1 ZNF2 ZNF335 SCRT2 RCOR1 FOS ATF7 RNU6-797P JHDM1D-AS1 KDM7A TBXAS1 GC07P140176 GC07M140095 ENSG00000251728
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around JHDM1D-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for JHDM1D-AS1 Gene

Genomic Locations for JHDM1D-AS1 Gene
chr7:140,177,261-140,179,640
(GRCh38/hg38)
Size:
2,380 bases
Orientation:
Plus strand
chr7:139,877,061-139,879,440
(GRCh37/hg19)

Genomic View for JHDM1D-AS1 Gene

Genes around JHDM1D-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
JHDM1D-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for JHDM1D-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for JHDM1D-AS1 Gene

Proteins for JHDM1D-AS1 Gene

Post-translational modifications for JHDM1D-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for JHDM1D-AS1 Gene

Domains & Families for JHDM1D-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for JHDM1D-AS1 Gene

Function for JHDM1D-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for JHDM1D-AS1 Gene

Localization for JHDM1D-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for JHDM1D-AS1 Gene

Pathways & Interactions for JHDM1D-AS1 Gene

SuperPathways for JHDM1D-AS1 Gene

No Data Available

Interacting Proteins for JHDM1D-AS1 Gene

Gene Ontology (GO) - Biological Process for JHDM1D-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for JHDM1D-AS1 Gene

Drugs & Compounds for JHDM1D-AS1 Gene

No Compound Related Data Available

Transcripts for JHDM1D-AS1 Gene

mRNA/cDNA for JHDM1D-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for JHDM1D-AS1 Gene

No ASD Table

Relevant External Links for JHDM1D-AS1 Gene

GeneLoc Exon Structure for
JHDM1D-AS1
ECgene alternative splicing isoforms for
JHDM1D-AS1

Expression for JHDM1D-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for JHDM1D-AS1 Gene

genes like me logo Genes that share expression patterns with JHDM1D-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for JHDM1D-AS1 Gene

Orthologs for JHDM1D-AS1 Gene

Evolution for JHDM1D-AS1 Gene

ENSEMBL:
Gene Tree for JHDM1D-AS1 (if available)
TreeFam:
Gene Tree for JHDM1D-AS1 (if available)

No data available for Orthologs for JHDM1D-AS1 Gene

Paralogs for JHDM1D-AS1 Gene

No data available for Paralogs for JHDM1D-AS1 Gene

Variants for JHDM1D-AS1 Gene

Sequence variations from dbSNP and Humsavar for JHDM1D-AS1 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000175332 -- 140,175,419(+) C/T upstream_transcript_variant
rs1000227569 -- 140,175,635(+) G/A upstream_transcript_variant
rs1000558645 -- 140,175,395(+) T/A upstream_transcript_variant
rs1000855648 -- 140,180,001(+) T/A/C downstream_transcript_variant
rs1002523293 -- 140,177,366(+) A/C non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for JHDM1D-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv608486 CNV loss 21841781
nsv608481 CNV gain 21841781
esv2735212 CNV deletion 23290073
dgv3678n106 CNV deletion 24896259
dgv11625n54 CNV gain 21841781

Additional Variant Information for JHDM1D-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
JHDM1D-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for JHDM1D-AS1 Gene

Disorders for JHDM1D-AS1 Gene

Additional Disease Information for JHDM1D-AS1

No disorders were found for JHDM1D-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for JHDM1D-AS1 Gene

Publications for JHDM1D-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for JHDM1D-AS1 Gene

Sources for JHDM1D-AS1 Gene

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